Table 3.
Relevant features for virulence, stress response and environmental adaptation.
| Main function | Gene/Island | Clonal Complex | |
|---|---|---|---|
| Virulence | LIPI-3 | CC1, CC6 | |
| gltA-gltB | CC1, CC6 | ||
| aut_IVb | CC1, CC6 | ||
| lapB | CC1, CC6, CC9, CC121 | ||
| ami | CC9, CC121, CC193 | ||
| tagB | CC9, CC121, CC193 | ||
| inlF | CC9, CC193 | ||
| inlG | CC9 | ||
| inlL | CC9 | ||
| Metal resistance |
Cadmium | cadA, cadC | CC1 |
| Arsenic | arsB, arsC | CC1, CC6, CC9, CC121, CC193 | |
| arsA, arsD | CC9 | ||
| Copper | CsoR-copA-copZ | CC1, CC6, CC9, CC121, CC193 | |
| copB | CC9, CC193 | ||
| Stress response |
Acid Tolerance | gadB, gadC | CC1, CC6, CC9, CC121, CC193 |
| SSI-1 | CC9 | ||
| Alkali response | mrpA, mrpB, mrpC, mrpE, mrpF | CC1, CC6, CC9, CC121, CC193 | |
| SSI-2 | CC121 | ||
| Low pH, high salt concentration, refrigeration | SSI-1 | CC9 | |
| Oxidative stress | SSI-2 | CC121 | |
| Cold-shock | cspD | CC1, CC6, CC9, CC121, CC193 | |
| Biocides resistance |
EmrB, mepA, bmrA, bmr3, norM | CC1, CC6, CC9, CC121, CC193 | |
| QACs | Tn6188_qacH | CC121 | |
| Biofilm production |
Lmo0673, lmo2504, luxS, recO | CC1, CC6, CC9, CC121, CC193 | |
| inlL | CC9 | ||
| PMSC inlA | CC9, CC121, CC193 | ||
QACs—quaternary ammonium compounds.