Abbreviation	Full name
ABCA7	ATP-binding cassette sub-family A member 7
ACT	Antichymotrypsin
AD	Alzheimer’s disease
ADAM	A disintegrin and metalloprotease
ADO	Adenosine
ADSP	AD Sequencing Project
AKAP9	A-kinase anchor protein 9
ALS	Amyotrophic lateral sclerosis
ANXA1	Annexin A1
AP-1	Activator protein 1
APP	Amyloid precursor protein
Arg-1	Arginase 1
ATP	Adenosine triphosphate
Aβ	Amyloid beta
BAI1	Brain-specific angiogenesis inhibitor 1
BBB	Blood-brain barrier
BBG	Brilliant blue G
BDNF	Brain-derived neurotrophic factor
BIN1	Bridging integrator 1
BITC	Benzyl isothiocyanate
C2CD3	C2 Domain Containing 3 Centriole Elongation Regulator
CaMKKβ	Calcium/calmodulin-dependent protein kinase kinase-β
CAR-Ps	Chimeric antigen receptor-phagocytic receptors
CD33	Siglec-3
CLEAR	Coordinated lysosomal expression and regulation
CLSTN2	Calsyntenin 2
CNS	Central Nervous System
CR1	Complement receptor 1
CTNNA2	N-catenin and Catenin alpha-2
CX3CR1	CX3C chemokine receptor 1
DAM	Disease-associated microglia
DAMPs	Danger-associated molecular patterns
EAE	Experimental autoimmune encephalomyelitis
ECM	Extracellular matrix
ERK1/2	Extracellular signal-regulated kinase 1/2
EXOC5	Exocyst complex component 5
FERMT2	Fermitin family homolog 2
FNBP1L	Formin-binding protein 1-like
GAS2L2	GAS2-like protein 2
Gas6	Growth arrest-specific protein 6
GPCRs	G-protein-coupled receptors
GULP1	PTB domain-containing engulfment adapter protein 1
GWAS	Genome-wide association studies
HO-1	Heme oxygenase-1
IκB	Inhibitors of NF-κB
IKK	IκB kinase
IL-4	Interleukin 4
IRAK	Interleukin-1 receptor-associated kinase
JAK/STAT	Janus kinase/signal transducer and activator of transcription
KIF2A	Kinesin heavy chain member 2A
LAP	LC3-associated phagocytosis
LHX9	LIM Homeobox 9
LKB1	Liver kinase B1
LOAD	Late-onset Alzheimer’s Disease
LPC	Lipocortin
LPS	Lipopolysaccharide
LRP1	LDL-receptor-associated protein 1
LTD	Long-term depression
LTP	Long-term potentiation
MAPK	Mitogen-activated protein kinases
MFG-E8	Milk fat globule-EGF factor 8 protein
MS	Multiple sclerosis
MyD88	Myeloid differentiation factor 88
NALCN	Sodium Leak Channel, Non-Selective
NDRG2	NDRG Family Member 2
NF-κB	Nuclear factor-κB
NFTs	Neurofibrillary tangles
NICD	Notch intracellular domain
NLRs	Nucleotide-binding oligomerization domain-like receptors
NO	Nitric oxide
NOX	Nicotinamide adenine dinucleotide phosphate oxidase
NSF	Vesicle-fusing ATPase
OECs	Olfactory ensheathing cells
P2 × 7R	P2 × 7 receptor
PAMP	Pathogen-associated molecular patterns
PILRA	Paired immunoglobin-like type 2 receptor alpha
PI3K	Phosphoinositide 3-kinase
PGC-1α	Peroxisome proliferator-activated receptor γ coactivator 1α
PKB	Protein kinase B
PLC	Phospholipase C
PPAR-γ	Peroxisome proliferator-activated receptor gamma
PRKCH	Protein kinase C
PRRs	Pattern recognition receptors
PSD-95	Postsynaptic density protein-95
PSEN1	Presenilin 1
PtdSer	Phosphatidylserine
RAGE	Receptor for advanced glycation end products
Rac1	Ras-related C3 botulinum toxin substrate 1
RIPK1	Receptor-interacting serine/threonine kinase 1
ROS	Reactive oxygen species
RXRs	Retinoid X receptors
S1P	Sphingosine-1-phosphate
SAP	Serum amyloid protein
SAβ	Soluble amyloid beta
SEL1L	Suppressor of lin-12-like protein 1
sFKN	Soluble fractalkine
SIGLECs	Sialic acid-binding immunoglobulin-like lectins
SIRPα	Signal-regulatory protein alpha
Sirt1	Sirtuin 1
SLC24A4	Solute carrier family 24 member 4
SNP	Single nucleotide polymorphism
SOCS	Suppressor of cytokine signaling
SORL1	Sortilin related receptor 1
SRA	Scavenger receptor A
SR-A1	Class A1 scavenger receptors
SR-MARCO	Scavenger receptor and macrophage receptor with collagenous structure
STAT	Signal Transducer and Activator of Transcription
STC	Synaptic tagging and capture
SYTL3	Synaptotagmin-like 3
TAM	Tyrosine kinases
TAK1	Transforming growth factor-β-activated kinase-1
TDP-43	43 kDa TARDNA binding protein
TFEB	Transcription factor EB
TFEC	Transcription factor EC
MITF	Microphthalmia-transcription-factor
TG2	Transglutaminase 2
TIAF1	TGFB1-induced antiapoptotic factor 1
TLR s	Toll-like receptors
TMEM132A	Transmembrane Protein 132A
TNF	Tumor necrosis factor
TRAF6	Tumor necrosis factor receptor associated factor-6
TREM2	Triggering receptor expressed on myeloid cells 2
VR	Vitronectin receptor
WES	Whole exome sequencing
WGS	Whole genome sequencing
WNT7A	Wnt Family Member 7A
ZNF655	Zinc Finger Protein 655