Table 5. Accounting of TR ChIP-seq peaks.

TR ChIP-seq dataset
Comparison	Number
Total number of TR peaks	6302
Number of TR peaks associated with genes	5098
Number of genes* with associated TR peaks	6512
Number of genes without TR peaks	13783
Number of TR peaks with two or more genes	1546
Number of genes with multiple TR peaks	921
Number TR peaks not associated genes	1336
Percentage of TR peaks associated with genes	80.89%
TR ChIP-seq peaks at differentially expressed genes (DEGs) and non-DEGs
Number of DEGs from beginning to the end of metamorphosis with TR peaks	1355
Number of DEGs from premetamorphosis (NF50) to metamorphic climax (NF62) with multiple TR peaks	207
Number of DEGs from beginning to the end of metamorphosis without TR peaks	4206
Number of non-DEGs from beginning to the end of metamorphosis with TR peaks	3743
Number of DEGs after T3 treatment of premetamorphic (NF50) tadpoles with TR peaks	703
Number of DEGs after T3 treatment of premetamorphic (NF50) tadpoles without TR peaks	1975

* Some TR peaks are associated with more than one gene, and some genes have mulitple TR peaks

See S4, S5 and S6 Tables for a full accounting of the TR ChIP-seq data.