Table 3.
Method | k | Yeast | Elegans | Cod | Kestrel | Human |
---|---|---|---|---|---|---|
LPHash | 31 | 1.18 | 1.47 | 1.55 | 1.43 | 1.74 |
47 | 0.72 | 0.85 | 1.01 | 0.82 | 1.14 | |
63 | 0.53 | 0.64 | 0.83 | 0.58 | 0.87 | |
| ||||||
PTHash-v1 | 2.76 | 2.68 | 2.65 | 2.58 | 2.65 | |
PTHash-v2 | 2.20 | 2.13 | 2.09 | 2.06 | 2.04 | |
BBHash-v1 | 3.71 | 3.71 | 3.71 | 3.71 | 3.71 | |
BBHash-v2 | 3.06 | 3.06 | 3.06 | 3.06 | 3.06 |
The numbers reported in Table 3 were taken for k = 63 although the avg. bits/k-mer for PTHash and BBHash does not depend on k.