Skip to main content
. 2023 Jun 30;39(Suppl 1):i534–i543. doi: 10.1093/bioinformatics/btad219

Table 3.

Space in average bits/k-mer for PTHash and BBHash.a As reference points, we also report the bits/k-mer for partitioned LPHash for three representative values of k (see also Fig. 5).

Method k Yeast Elegans Cod Kestrel Human
LPHash 31 1.18 1.47 1.55 1.43 1.74
47 0.72 0.85 1.01 0.82 1.14
63 0.53 0.64 0.83 0.58 0.87

PTHash-v1 2.76 2.68 2.65 2.58 2.65
PTHash-v2 2.20 2.13 2.09 2.06 2.04
BBHash-v1 3.71 3.71 3.71 3.71 3.71
BBHash-v2 3.06 3.06 3.06 3.06 3.06

The numbers reported in Table 3 were taken for k = 63 although the avg. bits/k-mer for PTHash and BBHash does not depend on k.