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. 2023 Jun 30;39(Suppl 1):i534–i543. doi: 10.1093/bioinformatics/btad219

Table 5.

Total building time, including the time to read the input and serialize the data structure on disk. All constructions were run with four processing threads.

Method Yeast Elegans Cod Kestrel Human
mm:ss mm:ss mm:ss mm:ss mm:ss
LPHash 00:01 00:15 05:30 03:50 07:25
PTHash-v1 00:03 00:29 07:37 20:34 63:30
PTHash-v2 00:03 00:46 14:15 40:00 124:00
BBHash-v1 00:01 00:07 00:48 01:40 04:13
BBHash-v2 00:01 00:08 01:05 02:22 07:50