Table 4.

Genotyping rate and % of identical genotypes of SVJedi-graph and state of the art genotyping tools on the deletions and insertions of the ClusteredCalls HG002 SV set.^a

	Global		Deletions		Insertions
Tool	% of identical genotypes	Rate (%)	% of identical genotypes	Rate (%)	% of identical genotypes	Rate (%)
SVJedi-graph	69.4	81.5	51.5	95.3	80.7	74.9
cuteSV	71.4	100	76.5	100	67.9	100
LRcaller	66.4	100	71.2	100	63.1	100
Sniffles2	61.1	99.7	62.4	100	60.2	99.6
SVJedi	70.3	25.5	47.7	16.9	78.5	31.2

^aGenotyping was performed with the 30× CLR PacBio read dataset.