Table 2.
Genetic variations in each population: single nucleotide polymorphisms (SNPs), multiple nucleotide polymorphisms (MNPs), and insertions and deletions (indels).
| Patient 1 | Patient 2 | Patient 3 | Patient 4 | |
|---|---|---|---|---|
|
| ||||
| Total # unique SNPs/ MNPs | 4592 | 1972 | 1638 | 31 |
| # SNPs/ MNPs separating most divergent isolates | 611 | 326 | 150 | 8 |
| Non-synonymous SNPs/ MNPs | 2803 | 1294 | 1024 | 24 |
| Synonymous SNPs/ MNPs | 1248 | 484 | 425 | 5 |
| SNPs in non-coding regions | 541 | 194 | 189 | 2 |
| Total # indels | 498 | 307 | 330 | 14 |
| Indels in non-coding regions | 204 | 99 | 115 | 2 |