Table 1:
Gene | LOEUF | Obs. | Exp. | Condition and reference | |
---|---|---|---|---|---|
| |||||
RPS15A * | 0.61 | 0.56 | 0 | 5.4 | Diamond-Blackfan anemia: Red blood cell aplasia resulting in growth, craniofacial, and other congenital defects [23] |
DCX | 0.48 | 0.62 | 3 | 12.6 | Lissencephaly: Migrational arrest of neurons resulting in mental re-tardation and seizures [24] |
SOX2 | 0.33 | 0.57 | 1 | 8.3 | Syndromic microphthalmia: Missing or small eyes from birth [25] |
NDP | 0.33 | 0.88 | 0 | 3.4 | Norrie disease: Retinal dystrophy resulting in early childhood blindness, mental disorders, and deafness [26] |
EIF5A | 0.32 | 0.54 | 1 | 8.7 | Faundes-Banka syndrome: Developmental delay, microcephaly, and facial dysmorphisms [27] |
CDKN1C | 0.27 | 0.53 | 0 | 5.7 | Beckwith-Wiedemann syndrome: Pediatric overgrowth with predisposition to tumor development [28] |
TGIF1 | 0.25 | 0.91 | 5 | 11.5 | Holoprosencephaly: Structural malformation of the forebrain during development [29] |
SH2D1A | 0.23 | 0.96 | 1 | 4.9 | Lymphoproliferative syndrome: Severe immune dysregulation due to improper lymphocyte apoptosis [30] |
CEBPA | 0.17 | 1.18 | 0 | 2.4 | Acute myeloid leukemia: Blood and bone marrow cancer with rapid progression [31] |
GATA4 | 0.15 | 0.53 | 3 | 14.7 | Atrial septal defect: Congenital heart defect resulting in a hole between the atria [32] |
TIMP3 | 0.13 | 0.53 | 2 | 11.8 | Sorsby fundus dystrophy: Retinal dystrophy that causes loss of vision [33] |
FOXC2 | 0.13 | 0.79 | 3 | 9.8 | Lymphedema-distichiasis syndrome: Lymphedema of the limbs and double rows of eyelashes [34] |
IGF2 | 0.12 | 1.13 | 3 | 6.8 | Silver-Russell syndrome: Growth retardation, relative macrocephaly, and feeding difficulties [35] |
PLN | 0.12 | 1.56 | 0 | 1.5 | Dilated cardiomyopathy: Enlarged heart chambers, decreased contrac-tile function, and heart failure [20] |
TWIST1 | 0.11 | 1.06 | 1 | 4.5 | Saethre-Chotzen syndrome: Craniosynostosis, facial dysmorphism, and hand and foot abnormalities [21] [22] |
Mutations that disrupt the functions of these genes are associated with Mendelian diseases in the OMIM database [36]. Genes are ordered by (posterior mean). Obs. and Exp. are the unique number of observed and expected LOFs respectively.
RPS15A is associated with Diamond-Blackfan anemia along with nine other genes considered constrained by but not by LOEUF (Supplementary Table 1).