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[Preprint]. 2023 Jun 13:rs.3.rs-3012879. [Version 1] doi: 10.21203/rs.3.rs-3012879/v1

Table 1:

OMIM genes constrained by shet but not by LOEUF.

Gene shet LOEUF Obs. Exp. Condition and reference

RPS15A * 0.61 0.56 0 5.4 Diamond-Blackfan anemia: Red blood cell aplasia resulting in growth, craniofacial, and other congenital defects [23]
DCX 0.48 0.62 3 12.6 Lissencephaly: Migrational arrest of neurons resulting in mental re-tardation and seizures [24]
SOX2 0.33 0.57 1 8.3 Syndromic microphthalmia: Missing or small eyes from birth [25]
NDP 0.33 0.88 0 3.4 Norrie disease: Retinal dystrophy resulting in early childhood blindness, mental disorders, and deafness [26]
EIF5A 0.32 0.54 1 8.7 Faundes-Banka syndrome: Developmental delay, microcephaly, and facial dysmorphisms [27]
CDKN1C 0.27 0.53 0 5.7 Beckwith-Wiedemann syndrome: Pediatric overgrowth with predisposition to tumor development [28]
TGIF1 0.25 0.91 5 11.5 Holoprosencephaly: Structural malformation of the forebrain during development [29]
SH2D1A 0.23 0.96 1 4.9 Lymphoproliferative syndrome: Severe immune dysregulation due to improper lymphocyte apoptosis [30]
CEBPA 0.17 1.18 0 2.4 Acute myeloid leukemia: Blood and bone marrow cancer with rapid progression [31]
GATA4 0.15 0.53 3 14.7 Atrial septal defect: Congenital heart defect resulting in a hole between the atria [32]
TIMP3 0.13 0.53 2 11.8 Sorsby fundus dystrophy: Retinal dystrophy that causes loss of vision [33]
FOXC2 0.13 0.79 3 9.8 Lymphedema-distichiasis syndrome: Lymphedema of the limbs and double rows of eyelashes [34]
IGF2 0.12 1.13 3 6.8 Silver-Russell syndrome: Growth retardation, relative macrocephaly, and feeding difficulties [35]
PLN 0.12 1.56 0 1.5 Dilated cardiomyopathy: Enlarged heart chambers, decreased contrac-tile function, and heart failure [20]
TWIST1 0.11 1.06 1 4.5 Saethre-Chotzen syndrome: Craniosynostosis, facial dysmorphism, and hand and foot abnormalities [21] [22]

Mutations that disrupt the functions of these genes are associated with Mendelian diseases in the OMIM database [36]. Genes are ordered by shet (posterior mean). Obs. and Exp. are the unique number of observed and expected LOFs respectively.

*

RPS15A is associated with Diamond-Blackfan anemia along with nine other genes considered constrained by shet but not by LOEUF (Supplementary Table 1).