Table 1.

Joint Analysis of the GWAS summary statistics of three lipids levels in the K:1 multiple phenotype setting. The three lipids levels include HDL, LDL and TG. We use $Z^{\left(P\right)}$ as an estimate of the direction of $\beta$. The angle between $Z^{\left(P\right)}$ and $u_k^{\left(P\right)}$ is estimated as ${\hat{\theta }}_k^{\left(P\right)}$. SNPs with the smallest five principal angles ${\hat{\theta }}_3^{\left(P\right)}$ as well as the SNPs with the five largest principal angles ${\hat{\theta }}_3^{\left(P\right)}$ are displayed

SNP	CHR	MinP pval	$V_1^{\left(P\right)}\text{ pval}$	$V_3^{\left(P\right)}\text{ pval}$	$Q^{\left(P\right)}\text{ pval}$	${\hat{\theta }}_1^{\left(P\right)}$	${\hat{\theta }}_3^{\left(P\right)}$
rs7257916	19	2.19E-05	8.24E-01	2.90E-18	1.38E-19	87.52	6.21
rs13210634	6	5.58E-04	3.68E-01	9.61E-09	3.89E-09	75.51	20.56
rs804267	8	6.49E-05	1.72E-01	6.08E-09	2.90E-09	68.23	21.79
rs531117	11	1.51E-04	3.77E-01	1.25E-08	2.95E-09	76.25	25.92
rs1233489	6	7.83E-04	3.44E-01	2.07E-08	3.69E-09	75.44	28.98
rs6124245	20	1.42E-06	3.45E-03	9.04E-01	4.89E-04	48.84	89.10
rs2168711	18	1.14E-07	1.30E-06	8.28E-01	1.79E-04	29.86	88.69
rs12673863	7	1.11E-07	3.61E-03	8.28E-01	1.31E-04	51.95	88.45
rs7826687	8	8.08E-07	5.56E-09	7.32E-01	1.11E-03	4.35	88.03
rs17625826	2	1.22E-04	9.58E-08	5.49E-01	1.70E-03	11.64	86.29