Table 1.

Parameter table.

Symbol	Description	Ranges	Citations
	Number of transmitted lineages	0
	Population growth rate	1
	Rate of recombination per lineage	{0, 0.001, 0.01, 0.05, 0.1}	Neher and Leitner (2010); Batorsky et al. (2011); Jetzt et al. (2000); Zhuang et al. (2002)
	Global flow rate of a lineage into and out of the latent reservoir	[0.5–5.25]*	Siliciano et al. (2003)
NL	Size of the latent pool	[101–103]	Siliciano et al. (2003); Finzi et al. (1997); Chun et al. (1997); Wong et al. (1997); Ho et al. (2013)
Bstrength	Population size (N) during demographic bottlenecks	[1–100]
Bfrequency	Frequency of bottlenecks (days)	[14–365]
kA	Number of active lineages
kL	Number of latent lineages

*This range of λ corresponds to these values using the equation .