Table 1. Distribution of SARS-CoV-2 lineages among sequences deposited on GISAID from India.

SARS-CoV-2 Lineage Distribution		Total Count (Percentage)
XBB*	XBB.1.16	2281 (79.87%)	723 (31.70%)
	XBB.1.16.1		310 (13.59%)
	XBB.2.3		256 (11.22%)
	XBB.1.5		197 (8.64%)
	XBB.1		151 (6.62%)
	XBB.2		126 (5.52%)
	XBB		80 (3.51%)
	XBB.2.3.2		54 (2.37%)
	XBB.1.9.1		51 (2.24%)
	XBB.1.5.28		44 (1.93%)
	XBB.3		41 (1.80%)
	XBB.1.9.2		30 (1.32%)
	XBB.2.5		25 (1.10%)
	XBB.2.4		21 (0.92%)
	XBB.2.3.3		17 (0.75%)
	XBB.2.3.4		17 (0.75%)
	FL.2		13 (0.57%)
	XBB.1.5.24		10 (0.44%)
	XBB.1.9		9 (0.39%)
	XBB.1.5.18		8 (0.35%)
	XBB.1.5.12		6 (0.26%)
	XBB.2.6		6 (0.26%)
	XBB.1.5.15		5 (0.22%)
	XBB.1.5.7		5 (0.22%)
	XBB.8		5 (0.22%)
	XBB.1.11.1		4 (0.18%)
	XBB.1.9.3		4 (0.18%)
	XBB.2.7		4 (0.18%)
	XBB.1.15		3 (0.13%)
	XBB.1.22		3 (0.13%)
	XBB.1.3		3 (0.13%)
	XBB.1.5.13		3 (0.13%)
	XBB.1.5.17		3 (0.13%)
	EG.1		3 (0.13%)
	FL.1		3 (0.13%)
	XBB.1.5.32		2 (0.09%)
	XBB.1.5.33		2 (0.09%)
	XBB.1.5.5		2 (0.09%)
	XBB.1.5.8		2 (0.09%)
	XBB.1.7		2 (0.09%)
	XBB.1.9.4		2 (0.09%)
	XBB.2.3.1		2 (0.09%)
	XBB.5		2 (0.09%)
	XBB.6		2 (0.09%)
	XBB.1.1		1 (0.04%)
	XBB.1.12		1 (0.04%)
	XBB.1.17.1		1 (0.04%)
	XBB.1.19		1 (0.04%)
	XBB.1.22.1		1 (0.04%)
	XBB.1.22.2		1 (0.04%)
	XBB.1.27		1 (0.04%)
	XBB.1.4		1 (0.04%)
	XBB.1.5.16		1 (0.04%)
	XBB.1.5.20		1 (0.04%)
	XBB.1.5.23		1 (0.04%)
	XBB.1.5.31		1 (0.04%)
	XBB.1.5.39		1 (0.04%)
	XBB.1.5.4		1 (0.04%)
	XBB.1.9.5		1 (0.04%)
	XBB.2.1		1 (0.04%)
	XBB.2.7.1		1 (0.04%)
	XBB.2.8		1 (0.04%)
	XBB.3.2		1 (0.04%)
	FD.1		1 (0.04%)
BQ.1*	BQ.1.1	182      (6.37%)	48 (26.37%)
	BQ.1		25 (13.74%)
	BQ.1.2		6 (3.30%)
	BQ.1.22		6 (3.30%)
	BQ.1.23		6 (3.30%)
	BQ.1.1.3		5 (2.75%)
	BQ.1.1.51		5 (2.75%)
	BQ.1.2.1		5 (2.75%)
	BQ.1.1.18		4 (2.20%)
	BQ.1.1.8		4 (2.20%)
	BQ.1.10		4 (2.20%)
	BQ.1.12		4 (2.20%)
	BQ.1.13.1		4 (2.20%)
	BQ.1.1.22		3 (1.65%)
	BQ.1.1.32		3 (1.65%)
	BQ.1.1.45		3 (1.65%)
	BQ.1.15		3 (1.65%)
	BQ.1.5		3 (1.65%)
	BQ.1.9		3 (1.65%)
	BQ.1.1.4		2 (1.10%)
	BQ.1.1.5		2 (1.10%)
	BQ.1.1.7		2 (1.10%)
	BQ.1.8		2 (1.10%)
	DP.1		2 (1.10%)
	BQ.1.1.11		1 (0.55%)
	BQ.1.1.12		1 (0.55%)
	BQ.1.1.24		1 (0.55%)
	BQ.1.1.31		1 (0.55%)
	BQ.1.1.35		1 (0.55%)
	BQ.1.1.38		1 (0.55%)
	BQ.1.1.41		1 (0.55%)
	BQ.1.1.47		1 (0.55%)
	BQ.1.1.52		1 (0.55%)
	BQ.1.1.59		1 (0.55%)
	BQ.1.1.67		1 (0.55%)
	BQ.1.1.68		1 (0.55%)
	BQ.1.1.74		1 (0.55%)
	BQ.1.10.3		1 (0.55%)
	BQ.1.18		1 (0.55%)
	BQ.1.24		1 (0.55%)
	BQ.1.25		1 (0.55%)
	BQ.1.25.1		1 (0.55%)
	BQ.1.3		1 (0.55%)
	BQ.1.32		1 (0.55%)
	BQ.1.8.1		1 (0.55%)
	BQ.1.8.2		1 (0.55%)
	DU.1		1 (0.55%)
	EE.2		1 (0.55%)
	EF.1		1 (0.55%)
	EF.1.1.1		1 (0.55%)
	EW.2		1 (0.55%)
	FC.1		1 (0.55%)
BA.2.75*	CH.1.1	157      (5.50%)	16 (10.19%)
	BN.1.2		12 (7.64%)
	BN.1		9 (5.73%)
	BY.1		9 (5.73%)
	CH.1.1.1		9 (5.73%)
	BR.2.1		8 (5.10%)
	CH.1.1.3		7 (4.46%)
	BN.1.4.5		6 (3.82%)
	CH.1.1.18		6 (3.82%)
	BN.1.3.1		5 (3.18%)
	BN.1.4		5 (3.18%)
	BA.2.75		5 (3.18%)
	BA.2.75.2		4 (2.55%)
	BL.1		4 (2.55%)
	BN.1.1		4 (2.55%)
	BN.1.1.1		4 (2.55%)
	BN.1.3		4 (2.55%)
	BA.2.75.6		3 (1.91%)
	BM.1.1.3		3 (1.91%)
	CH.1.1.11		3 (1.91%)
	CH.1.1.7		3 (1.91%)
	BA.2.75.1		2 (1.27%)
	BL.2		2 (1.27%)
	BN.1.3.5		2 (1.27%)
	BN.1.3.7		2 (1.27%)
	BN.2.1		2 (1.27%)
	BR.2		2 (1.27%)
	BA.2.75.10		1 (0.64%)
	BA.2.75.4		1 (0.64%)
	BL.1.3		1 (0.64%)
	BM.1.1		1 (0.64%)
	BM.4.1.1		1 (0.64%)
	BN.1.11		1 (0.64%)
	BN.1.2.2		1 (0.64%)
	BN.1.2.3		1 (0.64%)
	BN.1.2.4		1 (0.64%)
	BN.1.3.8		1 (0.64%)
	BN.1.5		1 (0.64%)
	BN.5		1 (0.64%)
	BY.1.1		1 (0.64%)
	CA.3		1 (0.64%)
	DV.2		1 (0.64%)
	EP.1		1 (0.64%)
BA.5*	BA.5	74        (2.59%)	9 (12.16%)
	BA.5.2		5 (6.76%)
	BF.7.14		5 (6.76%)
	BA.5.2.48		4 (5.41%)
	CK.1		4 (5.41%)
	DY.2		4 (5.41%)
	DY.4		4 (5.41%)
	BA.5.3		3 (4.05%)
	BE.9		3 (4.05%)
	CK.3		3 (4.05%)
	BA.5.1		2 (2.70%)
	BA.5.2.1		2 (2.70%)
	BE.1.1.1		2 (2.70%)
	BF.5		2 (2.70%)
	BF.7.15		2 (2.70%)
	BF.7.6		2 (2.70%)
	BA.5.1.28		1 (1.35%)
	BA.5.1.36		1 (1.35%)
	BA.5.2.26		1 (1.35%)
	BA.5.2.34		1 (1.35%)
	BA.5.2.49		1 (1.35%)
	BA.5.2.9		1 (1.35%)
	BA.5.3.1		1 (1.35%)
	BE.1.2		1 (1.35%)
	BF.26		1 (1.35%)
	BF.7		1 (1.35%)
	BF.7.4		1 (1.35%)
	BF.7.4.1		1 (1.35%)
	BF.7.5.1		1 (1.35%)
	BW.1.1		1 (1.35%)
	CG.1		1 (1.35%)
	CL.1		1 (1.35%)
	CP.7		1 (1.35%)
	CQ.2		1 (1.35%)
Other Lineages	B.1.14	68        (2.38%)	23 (33.82%)
	B.1.617.2		14 (20.59%)
	B.1.1		10 (14.71%)
	B		7 (10.29%)
	B.1.1.161		6 (8.82%)
	B.1		5 (7.35%)
	B.26		1 (1.47%)
	B.55		1 (1.47%)
	B.6		1 (1.47%)
Other Omicron Lineages	BA.2	60           (2.10%)	29 (48.33%)
	B.1.1.529		6 (10%)
	BA.2.10		6 (10%)
	BA.2.23		6 (10%)
	BA.2.76		3 (5%)
	CM.12		3 (5%)
	BA.2.10.1		2 (3.33%)
	BA.2.12.1		1 (1.67%)
	BA.2.3.20		1 (1.67%)
	BA.2.31		1 (1.67%)
	BA.2.74		1 (1.67%)
	BA.4.6		1 (1.67%)
Other Recombinant Lineages	XBF	34         (1.19%)	10 (29.41%)
	XAP		8 (23.53%)
	XBH		4 (11.76%)
	XAR		3 (8.82%)
	XBL		2 (5.88%)
	XT		2 (5.88%)
	XAH		1 (2.94%)
	XAY.2		1 (2.94%)
	XBF.5		1 (2.94%)
	XBN		1 (2.94%)
	XM		1 (2.94%)
Grand Total		2856 (100%)