Table 2.
Oligonucleotides used in this study
| Oligonucleotide | Sequence (5′-3′) | Reference |
|---|---|---|
| 305_PAT3 | GGGGACGCAGGTGGTAGGTTTC | (40) |
| 306_PBS2 | GTAATACGACTCACTATAGGGCGA | (40) |
| 614_EMSA | CCCCCCCCCTAGCCCCCCCCCCCCCCCC | This study |
| 615_EMSA | CCCCCCCCCTAGTAGCCCCCCCCCCCCC | This study |
| 799_B | AGTGGATCCTGCTATTATATCATCATCTAAATAATAGGGGACGCAGGTGGTA | This study |
| 803_U | AGTGGATCCTGCATAATATAGTAGTAGTAAATAATAGGGGACGCAGGTGGTA | This study |
| 804_Trio | AGTGGATCCTGCTATTATTAGTAGTAGATTTATTATGGGGACGCAGGTGGTAGGTTTCGAG | This study |
| 805_U&Trio | AGTGGATCCTGCATAATATAGTAGTAGATTTATTATGGGGACGCAGGTGGTAGGTTTCGAG | This study |
| 823_PBS1 | AATTAACCCTCACTAAAGGGAAC | (40) |
| 824_b+5 | ATCGAATTCAAACCTACCACTTACCTACCACTTACCTACCACCCGGGTGGTAAGTTGCAGACATGCTTTCATTAAAAGCCTCATCAGAAGCCT | This study |
| 825_b+10 | ATCGAATTCAAACCTACCACTTACCTACCACTTACCTACCACCCGGGTGGTAAGTTGCAGACAATTGTTGCTTTCATTAAAAGCCTCATCAGAAGCCT | This study |
| 887_EMSA | CCCCCCCCTAGTAGTAGCCCCCCCCCCC | This study |
| 888_EMSA | CCCCCCCCCCCCCCCCCTAAATAATACC | This study |
| 889_EMSA | CCCCCCCCTAGTAGTAGTAACCCCCCCC | This study |
| 890_EMSA | CCCCCCCCTAGTAGTAGTAAATACCCCC | This study |
| 912_a+5 | AGTGGATCCTGCTATTATTAGTAGTAGTAAATAATAGGGGACGCAGGTGGTAGGTTTCGAGTATTAAGCAGAAATTTTTGAACAGGCTTCTGATG | This study |
| 913_a+10 | AGTGGATCCTGCTATTATTAGTAGTAGTAAATAATAGGGGACGCAGGTGGTAGGTTTCGAGTATTAAGCAACAATGAAATTTTTGAACAGGCTTCTGATG | This study |
| 929_Trio-A1 | AGTGGATCCTGCTATTATTAGTAGTAGTAAATTATAGGGGACGCAGGTGGTAGGTTTC | This study |
| 930_Trio-A2 | AGTGGATCCTGCTATTATTAGTAGTAGTAAATAATTGGGGACGCAGGTGGTAGGTTTCGAG | This study |
| 1031-Consense-1 | AGAAAACCTACCACCTAA | (40) |
| 1032-Consense-2 | TTAGGTGGTAGGTTTTCT | (40) |
| 1033-Nonsense-1 | AGACCCAAGCAACAATAA | (40) |
| 1034-Nonsense-2 | TTATTGTTGCTTGGGTCT | (40) |
| 1035-9mer-1 | AGACCACCTACCACATAA | This study |
| 1036-9mer-2 | TTATGTGGTAGGTGGTCT | This study |
| 1037-8mer-L-1 | AGACCACCTACCAAATAA | This study |
| 1038-8mer-L-2 | TTATTTGGTAGGTGGTCT | This study |
| 1039-8mer-R-1 | AGACCCCCTACCACATAA | This study |
| 1040-8mer-R-2 | TTATGTGGTAGGGGGTCT | This study |
| 1052-DnaABox2+3_1 | TGCAACTTACCACCCGGGTGGTGGTAAAGT | This study |
| 1053-DnaABox2+3_2 | ACTTTACCACCACCCGGGTGGTAAGTTGCA | This study |
| 1054-DnaABox2+3N_1 | TGCAACTTACCACCCGGTGTTGTTGCAAGT | This study |
| 1055-DnaABox2+3N_2 | ACTTGCAACAACACCGGGTGGTAAGTTGCA | This study |
| 1056-DnaABox2N+3N_1 | TGCACAGGCAACACCGGTGTTGTTGCAAGT | This study |
| 1057-DnaABox2N+3N_2 | ACTTGCAACAACACCGGTGTTGCCTGTGCA | This study |
| 1306_DnaABox 2+3(2)_1 | TGCAACTTACCACCCGTGGTAGGTAAGTGGAA | This study |
| 1307_DnaABox 2+3(2)_2 | TTCCACTTACCTACCACGGGTGGTAAGTTGCA | This study |
| 1308_DnaABox 2+3(3)_1 | TGCAACTTACCACCCGGTGGTAGGTAAGTGGA | This study |
| 1309_DnaABox 2+3(3)_2 | TCCACTTACCTACCACCGGGTGGTAAGTTGCA | This study |
| 1310_DnaABox 2+3(4)_1 | TGCAACTTACCACCCGGGTGGTAGGTAAGTGG | This study |
| 1311_DnaABox 2+3(4)_2 | CCACTTACCTACCACCCGGGTGGTAAGTTGCA | This study |
| 1316_DnaABox 2R+3(1)_1 | TGCAGTGGTAAGTCGTGGTAGGTAAGTGGAAA | This study |
| 1317_DnaABox 2R+3(1)_2 | TTTCCACTTACCTACCACGACTTACCACTGCA | This study |
| 1318_DnaABox 2R+3(2)_1 | TGCAGTGGTAAGTCCGTGGTAGGTAAGTGGAA | This study |
| 1319_DnaABox 2R+3(2)_2 | TTCCACTTACCTACCACGGACTTACCACTGCA | This study |
| 1320_DnaABox 2R+3(3)_1 | TGCAGTGGTAAGTCCGGTGGTAGGTAAGTGGA | This study |
| 1321_DnaABox 2R+3(3)_2 | TCCACTTACCTACCACCGGACTTACCACTGCA | This study |
| 1322_DnaABox 2R+3(4)_1 | TGCAGTGGTAAGTCCGGGTGGTAGGTAAGTGG | This study |
| 1323_DnaABox 2R+3(4)_2 | CCACTTACCTACCACCCGGACTTACCACTGCA | This study |
| 1338_2+3(+5)_1 | TGCAACTTACCACCCAGGGTGGTAGGTAAGTG | This study |
| 1339_2+3(+5)_2 | CACTTACCTACCACCCTGGGTGGTAAGTTGCA | This study |
| 1340_2+3(+6)_1 | TGCAACTTACCACCCAAGGGTGGTAGGTAAGT | This study |
| 1341_2+3(+6)_2 | ACTTACCTACCACCCTTGGGTGGTAAGTTGCA | This study |
| 1342_2R+3(+5)_1 | TGCAGTGGTAAGTCCAGGGTGGTAGGTAAGTG | This study |
| 1343_2R+3(+5)_2 | CACTTACCTACCACCCTGGACTTACCACTGCA | This study |
| 1344_2R+3(+6)_1 | TGCAGTGGTAAGTCCAAGGGTGGTAGGTAAGT | This study |
| 1345_2R+3(+6)_2 | ACTTACCTACCACCCTTGGACTTACCACTGCA | This study |
| 1594_2R_R | ATATCGAATTCAAACCTACCACTTACCTACCACTTACCTACCACCCACTTACCACACTGCAGAC | This study |
| TMA28 | GCTATTATTAGTAGTAGTAAATAATAGG | (9) |