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. Author manuscript; available in PMC: 2024 Jun 12.
Published in final edited form as: Cancer Cell. 2023 Jun 12;41(6):1032–1047.e4. doi: 10.1016/j.ccell.2023.05.007

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Biological samples
Normal donor human bone marrow samples University of Texas Lymphoma/Myeloma Department Myeloma Tissue Bank https://www.mdanderson.org/research/departments-labs-institutes/departments-divisions/lymphoma-myeloma.html
Myeloma precursor disease and multiple myeloma patient bone marrow samples University of Texas Lymphoma/Myeloma Department Myeloma Tissue Bank https://www.mdanderson.org/research/departments-labs-institutes/departments-divisions/lymphoma-myeloma.html
Critical commercial assays
Chromium Next GEM Single Cell 5’ Library and Gel Bead kit v1.1, 16 rxns. 10x Genomics 1000165
Chromium Single Cell V(D)J Enrichment Reagent Kits Human Bcells 10x Genomics 1000016
Chromium Next GEM Chip G Single Cell kit 10X Genomics 1000120
Qubit HS dsDNA Assay ThermoFisher Q32854
HS DNA Bioanalyzer Agilent 5067–4626
KAPA Biosystems KAPA Library Quantification Kit KAPA/Roche Diagnostics KK4835/079602040 01
EasySep CD138 Positive Selection Kit StemCell Technology Cat#: 17887A
40-micron sterile cell strainer VWR Cat#: 21008–949
Density gradient centrifugation, LymphoPrep StemCell Technology LymphoPrep Cat#: 07851
Deposited data
Aligned scRNA-seq and scBCR-seq data of myeloma and precursors This paper EGAS00001006694
Bulk mRNA-seq expression data NCI Cancer Genomic Data Commons MMRF-COMMPASS
Software and algorithms
Cell Ranger-5.0.0 10x Genomics https://www.10xgenomics.com/
R-4.0.0 R Core Team https://www.r-project.org/
Seurat-4.0.3 Stuart et al.50 https://satijalab.org/seurat/
Harmony-0.1.0 Korsunsky et al.51 https://portals.broadinstitute.org/harmony
inferCNV-1.5.0 Tickle et al.53 https://github.com/broadinstitute/inferCNV
CytoTRACE Gunsagar et al.40 https://cytotrace.stanford.edu/
Monocle2 Trapnell et al. (2014)41
Qiu et al. (2017)42,43
http://cole-trapnell-lab.github.io/monocle-release/
Monocle3–0.2.0 Trapnell et al. (2014)41
Qiu et al. (2017)42,43
http://cole-trapnell-lab.github.io/monocle-release/