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. 2023 Jun 24;4(3):102381. doi: 10.1016/j.xpro.2023.102381

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© 2023 The Author(s)

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

PMC Copyright notice

The results of the differential protein expression and Gene Ontology analysis are presented

The data analysis settings are described above and provided in the R codes.

(A) shows the VolcanoPlot created using the EnhancedVolcano package, with significantly changed protein abundance determined by a threshold for significance of p < 0.05 (permutation-based FDR correction) and a 1.0 log2FC.

(B and C) (B) and (C) display the results of GO and functional analysis for brain-specific and breast-specific significantly enriched proteins, respectively, using the ClusterProfiler package.