REAGENT or RESOURCE	SOURCE	IDENTIFIER
Water, Optima LC/MS grade	Fisher Scientific	W6-1
3M™ Empore™ SDB-RPS Solid Phase Extraction Disks (SPE)	Fisher Scientific	13-110-022
Sodium deoxycholate (SDC)	Millipore Sigma	D6750
Tris (2-carboxyethyl) phosphine hydrochloride (TCEP)	Millipore Sigma	C4706
2-Chloroacetamide (CAA)	Millipore Sigma	C0267
OmniPur TRIS Solution 1.0 M pH 8.0 (Tris)	Millipore Sigma	9290-OP
Sodium hydroxide (NaOH)	Sigma-Aldrich	221465-500G
Sera-Mag SpeedBeads	Thermo Scientific	4515-2105-050250
Trypsin/Lys-C Mass spec grade	Promega	V5071
Trifluoroacetic acid, sequencing grade (TFA)	Thermo Fisher Scientific	28904
Ethylacetate	Millipore Sigma	270989
Acetonitrile, Optima LC/MS Grade (ACN)	Fisher Scientific	A955
Ammonium hydroxide solution (NH4OH)	Honeywell Fluka	4427310X1ML
Formic acid, Optima LC/MS Grade (FA)	Fisher Scientific	A11710X1-AMP
Impulse heat sealer	Sealer Sales	KF200H
Eppendorf LoBind Microcentrifuge Tubes	Eppendorf	22431081
Centrifuge adapter 10 μL, 200 μL	GL Sceinces	5010-21514
Qorpak Glass Bottle with Green Thermoset F217 and PTFE Caps	Fisher Scientific	02-992-128
Savant Speed-Vac Plus concentrator	Thermo Fisher Scientific Savant	SC110A
Ultrasonic bath	Branson	CPX-952-218R
NanoDrop One Microvolume UV-Vis Spectrophotometer	Thermo Fisher Scientific	ND-ONE-W
Autosampler vials, 9 mm plastic screw thread	Thermo Fisher Scientific	C400011
SUN-Sri StepVial II Cap	Thermo Fisher Scientific	503790
BeatBox	PreOmics	https://www.preomics.com/products/beatbox
Software and algorithms
R Environment	The R Project for Statistical Computing1	https://www.r-project.org/
R Studio	RStudio Team1	https://www.rstudio.com/
clusterProfiler	Wu et al.2	https://guangchuangyu.github.io/software/clusterProfiler/
EnhancedVolcano	Blighe et al.3	https://github.com/kevinblighe/EnhancedVolcano
Perseus	Maxquant4	https://maxquant.net/perseus/
DIA-NN	Demichev et al.5	https://github.com/vdemichev/DiaNN