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. 2023 May 4;51(W1):W484–W492. doi: 10.1093/nar/gkad326

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© The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 5. — Case studies performed using Proksee. (A) Genome map showing contig boundaries and GC Skew following assembly of Staphylococcus aureus reads (left), and Assembly Report showing assembly metrics (right). (B) Zoomed in view of region of Haemophilus influenzae genome containing mobile genetic elements as identified using a variety of Proksee tools. (C) Prophage ϕLMC1 found in Listeria monocytogenes strain 08-5578 but not strain 08-5923 based on BLAST (top) and FastANI (bottom) comparisons. (D) Identification of methicillin-resistance gene (mecA) in Staphylococcus aureus genome and assessment of presence in 36 related genomes using BLAST.