Table 2.
Gene set libraries stored in the Enrichr-KG database, their category, and term and gene coverage counts
| Resource | Category | Terms | Gene coverage |
|---|---|---|---|
| Achilles (44) | Diseases/Drugs | 216 | 4779 |
| ARCHS4 (29) | Transcription | 1724 | 22 226 |
| ASCT + B (103) | Cell Types | 777 | 12 531 |
| CCLE (47) | Cell Types | 378 | 11 710 |
| ChEA3 (30) | Transcription | 757 | 18 364 |
| Descartes (48) | Cell Types | 172 | 9515 |
| DisGeNET (104) | Diseases/Drugs | 9828 | 17 266 |
| FANTOM6 (31) | Transcription | 206 | 13 682 |
| Gene Ontology (39,40) | Ontologies | 6036 | 14 929 |
| GWAS Catalog (105) | Diseases/Drugs | 1737 | 15 296 |
| Human Gene Atlas (49) | Cell Types | 84 | 12 087 |
| Human Phenotype Ontology (41) | Ontologies | 1779 | 3077 |
| DISEASES (42) | Ontologies | 1811 | 15 141 |
| KEGG (33,34) | Pathways | 320 | 8073 |
| LINCS (CRISPR KO) (45) | Diseases/Drugs | 5212 | 9440 |
| LINCS (Small Molecule) (45) | Diseases/Drugs | 5425 | 9525 |
| MGI Mammalian Phenotype (43) | Ontologies | 4601 | 9756 |
| Pfam (52) | Misc | 608 | 8975 |
| PFOCR (35) | Pathways | 17 326 | 12 765 |
| Reactome (36) | Pathways | 1818 | 10 489 |
| Tabula Muris (50) | Cell Types | 106 | 3857 |
| Tabula Sapiens (51) | Cell Types | 469 | 1509 |
| TRRUST (32) | Transcription | 571 | 3126 |
| WikiPathways (38) | Pathways | 622 | 7151 |