Biological samples |
|
Human bone marrow |
This paper |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Paraformaldehyde 16%, EM grade |
Electron Microscopy Sciences |
Cat#15710 |
Glutaraldehyde 25%, EM grade |
Electron Microscopy Sciences |
Cat#16220 |
Sodium cacodylate trihydrate |
Sigma-Aldrich |
Cat#C0250 |
PBS buffer (10× Dulbecco’s) powder |
ITW Reagents |
Cat#A0965 |
Evans Blue |
Sigma-Aldrich |
Cat#E2129 |
Certified low-melt agarose |
Bio-Rad |
Cat#161-3111 |
Glycid ether 100 |
Serva |
Cat#21045 |
Dodecenylsuccinic acid anhydride (DDSA) |
Serva |
Cat#20755 |
Methylnadic anhydride (NMA) |
Serva |
Cat#29452 |
2,4,6-Tris(dimethylaminomethyl)phenol (DMP-30) |
Serva |
Cat#36975 |
Osmium tetroxide in H2O |
Electron Microscopy Sciences |
Cat#19150 |
Uranyl acetate in H2O |
Serva |
Cat#77870 |
|
Deposited data |
|
Additional supplemental data |
This paper |
Mendeley Data: https://doi.org/10.17632/ct23zrnxc2.1
|
SerialEM scripts |
This paper; Schorb et al.6; Dittrich et al.1
|
https://serialemscripts.nexperion.net/ |
SerialEM tools |
This paper; Schorb et al.6; Dittrich et al.1
|
Github: https://git.embl.de/schorb/pyem/-/tree/master/applications
|
|
Software and algorithms |
|
Konstanz Information Miner (KNIME) |
Berthold et al.3
|
https://www.knime.com/ |
SerialEM |
Mastronarde2; Schorb et al.6
|
https://bio3d.colorado.edu/SerialEM/ |
pyEM |
Schorb et al.6
|
https://git.embl.de/schorb/pyem |
IMOD – 4.10.42 |
Kremer et al., 1996; Mastronarde and Held7
|
https://bio3d.colorado.edu/imod/ |
ImageJ (Fiji) – 1.53 |
Schneider et al.4
|
https://imagej.net/software/fiji/ |
|
Other |
|
Protein LoBind Tubes 1.5 mL |
Eppendorf |
Cat#0030108116 |
Serial Sectioning Protocol |
SynapseWeb, K. M. Harris, PI; University of Texas |
https://synapseweb.clm.utexas.edu/serial-sectioning |