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. 2023 Jun 22;4(3):102373. doi: 10.1016/j.xpro.2023.102373
REAGENT or RESOURCE SOURCE IDENTIFIER
Biological samples

Human bone marrow This paper N/A

Chemicals, peptides, and recombinant proteins

Paraformaldehyde 16%, EM grade Electron Microscopy Sciences Cat#15710
Glutaraldehyde 25%, EM grade Electron Microscopy Sciences Cat#16220
Sodium cacodylate trihydrate Sigma-Aldrich Cat#C0250
PBS buffer (10× Dulbecco’s) powder ITW Reagents Cat#A0965
Evans Blue Sigma-Aldrich Cat#E2129
Certified low-melt agarose Bio-Rad Cat#161-3111
Glycid ether 100 Serva Cat#21045
Dodecenylsuccinic acid anhydride (DDSA) Serva Cat#20755
Methylnadic anhydride (NMA) Serva Cat#29452
2,4,6-Tris(dimethylaminomethyl)phenol (DMP-30) Serva Cat#36975
Osmium tetroxide in H2O Electron Microscopy Sciences Cat#19150
Uranyl acetate in H2O Serva Cat#77870

Deposited data

Additional supplemental data This paper Mendeley Data: https://doi.org/10.17632/ct23zrnxc2.1
SerialEM scripts This paper; Schorb et al.6; Dittrich et al.1 https://serialemscripts.nexperion.net/
SerialEM tools This paper; Schorb et al.6; Dittrich et al.1 Github: https://git.embl.de/schorb/pyem/-/tree/master/applications

Software and algorithms

Konstanz Information Miner (KNIME) Berthold et al.3 https://www.knime.com/
SerialEM Mastronarde2; Schorb et al.6 https://bio3d.colorado.edu/SerialEM/
pyEM Schorb et al.6 https://git.embl.de/schorb/pyem
IMOD – 4.10.42 Kremer et al., 1996; Mastronarde and Held7 https://bio3d.colorado.edu/imod/
ImageJ (Fiji) – 1.53 Schneider et al.4 https://imagej.net/software/fiji/

Other

Protein LoBind Tubes 1.5 mL Eppendorf Cat#0030108116
Serial Sectioning Protocol SynapseWeb, K. M. Harris, PI; University of Texas https://synapseweb.clm.utexas.edu/serial-sectioning