Table 1.
Chr | Size of region (kb3) | Chromosomal Location (kb3) | Gene name(s) | Fatty Acid1 | # of SNPs | P-value1 | SNP1 | Prior GWAS evidence2 |
---|---|---|---|---|---|---|---|---|
1 | 4 | 248040 | TRIM58, OR2W3 | C18.1n9 | 3 | 4.63×10−18 | rs3811444 | (18) |
2 | 23 | 27741 | GCKR | C16.1n7 | 4 | 4.08×10−10 | rs1260326 | No |
2 | 1 bp | 196739 | DNAH7 | C17.0 | 1 | 5.51×10−10 | rs72915157 | No |
3 | 23 | 142642 | LOC100507389 ~PAQR9 ~PCOLCE2 |
C20.3n6 | 1 | 4.75×10−09 | rs2608073 | (18,19) |
C20.4n6 | 12 | 5.92×10−14 | rs2608073 | |||||
C22.5n3 | 2 | 2.37×10−13 | rs2608073 | |||||
4 | 1 bp | 111129 | ~ELOVL6 | C18.0 | 1 | 4.26×10−09 | rs5022521 | No |
5 | 1 bp | 131357 | ~ACSL6 | C22.5n3 | 1 | 4.59×10−09 | rs61078674 | No |
6 | 167 | 11007 | SYCP2L, ELOVL2, ELOVL2-AS1 |
C22.5n3 | 184 | 8.95×10−27 | rs2236212 | (18,19) |
C22.5n6 | 164 | 4.06×10−16 | rs9368564 | |||||
C22.6n3 | 84 | 7.19×10−12 | rs8523 | |||||
115 | 53165 | ELOVL5, RPL31P28 | C22.4n6 | 144 | 5.02×10−11 | rs9474482 | ||
90 | 135441 | HBS1L | C22.4n6 | 49 | 1.79×10−23 | rs9402685 | ||
112 | 161643 | AGPAT4 | C22.4n6 | 20 | 3.07×10−20 | rs75534358 | ||
10 | 121 | 102025 | CHUK, BLOC1S2, PKD2L1 | C18.1n7 | 5 | 3.28×10−23 | rs603424 | (19) |
11 | 1 bp | 58966 | DTX4 | C24.0 | 1 | 7.74×10−09 | rs138458717 | No |
11 | 714 | 61512 | SYT7,RPLP0P2, DAGLA, MYRF, TMEM258, FEN1, FADS2, FADS1, MIR1908, FADS3, RAB3IL1, BEST1, FTH1 | C18.1n9 | 82 | 1.45×10−21 | rs174551 | (18,19) |
C18.2n6 | 305 | 7.96×10−112 | rs174567 | |||||
C20.1n9 | 76 | 9.70×10−1/ | rs174551 | |||||
C20.2n6 | 249 | 1.36×10−85 | rs99780 | |||||
C20.3n6 | 580 | 1×10−256 | rs174528 | |||||
C20.4n6 | 354 | 1.77×10−134 | rs102275 | |||||
C20.5n3 | 79 | 3.31×10−18 | rs12226877 | |||||
C22.4n6 | 157 | 1.58×10−33 | rs174548 | |||||
C22.5n3 | 116 | 6.64×10−33 | rs174546 | |||||
C22.5n6 | 53 | 9.49×10−16 | rs61897793 | |||||
12 | 202 | 7082 | SPSB2, RPL13P5, LRRC23, ENO2, PTPN6, EMG1, PHB2, LPCAT3, C1S | C18.1n9 | 146 | 4.77×10−91 | rs1984564 | (18,19) |
C18.2n6 | 143 | 2.62×10−68 | rs73266713 | |||||
C20.3n6 | 65 | 1.18×10−11 | rs12579776 | |||||
C20.4n6 | 73 | 2.43×10−13 | rs117633233 | |||||
16 | 715 | 15481 | PDXDC1, NTAN1, RRN3, NPIPP1, C16orf45, MYH11 | C18.2n6 | 4 | 3.94×10−11 | rs12928099 | (19) |
C20.3n6 | 68 | 7.85×10−31 | rs72789542 | |||||
20 | 1 bp | 33146 | MAP1LC3A | C20.2n6 | 1 | 7.49×10−09 | rs1040746 | No |
Fatty acid, p-value and SNP are for the model showing the strongest evidence of association in the genomic region. Regions with significant associations for multiple fatty acids are depicted on separate rows.
Identified in one of two prior RBC-FA genome-wide association studies.
Kilobase (kb) is 1000s of base pairs (bp) and indicates the size of the region containing the significant SNPs or the number of kilobases from the end of the chromosome to the region of interest