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. 2023 Jun 21;14:1192781. doi: 10.3389/fmicb.2023.1192781

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Copyright © 2023 Javaran, Poursalavati, Lemoyne, Ste-Croix, Moffett and Fall.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Assignment of viral reads to taxa using different thresholds in the rdTotalRNA dataset from the BV-12-16 J sample. (A) Taxonomic binning was done using the default parameters in the meganization option of the MEGAN software. (B) Two thresholds, “Min Support Percent” and “Min Support,” were turned off (=0) when meganization was performed. The two numbers following the virus name (red color) consist of the NCBI taxonomy ID followed by a number that indicates the number of assigned reads.