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. 2023 May 11;122(12):2556–2563. doi: 10.1016/j.bpj.2023.05.009

Table 1.

Kinetic parameters for experimental ThT and NMR elongation data

NMR cseed = 1 μM cseed = 2 μM cseed = 5 μM cseed = 9.5 μM
y0 0.599 ± 0.001 0.250 ± 0.001 0.086 ± 0.001 0.093 ± 0.001
Aslow 0.333 ± 0.001 0.542 ± 0.001 0.720 ± 0.001 0.32 ± 0.01
Afast 0.084 ± 0.001 0.201 ± 0.001 0.223 ± 0.001 0.65 ± 0.01
kslow/h−1 0.031 ± 0.001 0.032 ± 0.001 0.139 ± 0.001 0.236 ± 0.005
kfast/h−1 0.66 ± 0.02 0.321 ± 0.005 0.739 ± 0.005 0.659 ± 0.008
tmidpoint/ha 13 9.3 3.0 1.1

ThT

y0 1.019 ± 0.002 0.992 ± 0.001 0.987 ± 0.001 0.987 ± 0.001
Aslow −1.01 ± 0.01 −0.919 ± 0.006 −0.367 ± 0.009 −0.231 ± 0.003
Afast n.d. −0.085 ± 0.006 −0.631 ± 0.008 −0.764 ± 0.003
kslow/h−1 0.084 ± 0.001 0.135 ± 0.001 0.156 ± 0.002 0.141 ± 0.002
kfast/h−1 n.d. 0.76 ± 0.09 0.579 ± 0.008 1.08 ± 0.01
tmidpoint/h 8.3 5 2 1

Results of fitting a double exponential function y(t) = y0 + Aslow exp(–kslowt) + Afast exp(–kfastt) to the experimental data determined by ThT fluorescence and NMR spectroscopy of samples with 100 μM aS monomers and varying concentration of preformed fibers (seeds), at T = 310 K. The midpoints, tmidoint, are plotted in Fig. S3. In Fig. 2, the amplitudes of the two phases are reported as percent of total amplitude. Amplitudes and rate constants for the fast and the low phases are plotted as a function of added seed concentration in Fig. 2. n.d.: not detected.

a

To determine midpoints of NMR kinetics, the time dependence of integrals obtained in 1D 1H NMR spectra (Fig. 1 B) were converted into the concentration of aS monomers. Thus, tmidpoint has been obtained at caS= 50 μM. To determine the final amount of aS monomers after seeded elongation reactions, samples were spun down, and monomers left in solution were determined by absorption spectroscopy.