Table 1.
Summary of the Montmorency assembly metrics
| Estimated haploid genome size (k-mer analysis; k = 25) | 621 Mb | ||||
|---|---|---|---|---|---|
| Estimated Heterozygosity (total) | 4.90% | ||||
| class | aaab | aabb | aabc | abcd | |
| 2.430% | 2.060% | 0.001% | 0.451% | ||
| Full assembly size | 1066 Mb | ||||
| Scaffolded assembly size | 771.8 Mb | ||||
| NG50 | 11.56 Mb | ||||
| Number of contigs | 3592 | ||||
| Linkage Groups | 24 | ||||
| BUSCO (viridiplantae db10) | complete | singletons | duplicates | missing | fragmented |
| Scaffolded assembly (24 LGs) | 98.6% | 5.4% | 93.2% | 0.9% | 0.5% |
| subgenome A | 91.5% | 89.6% | 1.9% | 6.4% | 2.1% |
| subgenome A’ | 94.8% | 92.9% | 1.9% | 4.0% | 1.2% |
| subgenome B | 90.8% | 88.2% | 2.6% | 7.3% | 1.9% |
| Estimated % repeats. (Full assembly) | LTR | TIR | Helitron | Total | |
| 35.6% | 11.6% | 1.3% | 48.5% | ||
| LAI | Full assembly (incl. unanchored) | 14.74 | |||
| Scaffolded assembly | 17.09 | ||||