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. 2023 Jun 26;5(6):acmi000485.v3. doi: 10.1099/acmi.0.000485.v3

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© 2023 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License.

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Fig. 1. — Phylogenetic relationship between Sequence Types (International Clones- IC) and AB341-IK15. Representative assemblies from each IC were used for this analysis and are as follows: IC1- SAMN07257378, IC2 – SAMN09667773, IC3- SAMN01828181, IC4 – SAMN09951355, IC5 – SAMN09951336, IC6 – SAMN12509149, IC7 – SAMN09951357, IC8 – SAMN03069270. The Pasteur Multi-locus Sequence Type (MLST) profiles of each IC were obtained, as well as the profile for AB341-IK15 using the PubMLST online webtool. The sequences for these seven genes were aligned using Clustal W and then concatenated using Geneious Prime. RAxML generated the phylogenetic tree. AB341-IK15 is highlighted in the green box and is in closest relation to ICs 5, 6 and 7 although is found in a clade all of its own.