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. 2023 Jun 14;3(6):100501. doi: 10.1016/j.crmeth.2023.100501
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Ubiquityl-PCNA (Lys164) Cell Signaling Technology RRID:AB_2798219
PCNA Millipore RRID:AB_11203836
α-tubulin Sigma-Aldrich RRID:AB_477583
Rad18 Abcam RRID:AB_1603946
CHK1 Santa Cruz Biotechnology RRID:AB_627257
CHK1pS345 Cell Signaling Technology RRID:AB_331212
γH2AX Cell Signaling Technology RRID:AB_2118009
H2AX Cell Signaling Technology RRID:AB_10694556
Polη Abcam RRID:AB_2756352
Polκ Atlas Antibodies RRID:AB_2668606
Polι Proteintech RRID:AB_2167009
RPA Abcam RRID:AB_302873
CPDs Cosmo Bio RRID:AB_1962813
USP1 Proteintech RRID:AB_2214314
Histone H2B Abcam RRID:AB_302612
Goat Anti-Rabbit Alexa 488 Thermo Fisher Scientific RRID:AB_2576217
Goat Anti-Rabbit Alexa 568 Thermo Fisher Scientific RRID:AB_10563566
Goat anti-Mouse Alexa 660 Thermo Fisher Scientific RRID:AB_2535722
Goat anti-Mouse Alexa 660 Thermo Fisher Scientific RRID:AB_2535722
Goat anti-Rabbit HRP Cell Signaling Technology RRID:AB_2099233
Goat anti-Mouse HRP Cell Signaling Technology RRID:AB_330924

Chemicals, peptides and recombinant proteins

Camptothecin Sigma-Aldrich C9911
Cisplatin Sigma-Aldrich P4394
DAPI Sigma-Aldrich D9542
Formaldehyde Thermo Fisher 28908
Hydrogen Peroxyde Sigma-Aldrich 216763
Sodium fluoride Sigma-Aldrich 201154
β-Glycerophosphate Sigma-Aldrich G9422
Halt Proteases and Phosphatases inhibitors Thermo Fisher Scientific 78440
Perm/Wash buffer BD biosciences 554723
Prolong Diamond AntiFade Thermo Fisher P36961
RNAse A EMD Millipore 70856
Benzonase Sigma-Aldrich E1014-5KU
BSA Sigma-Aldrich A2153
Critical commercial assays
BCA Protein Assay Kit Thermo Fisher Scientific 23225
Click-iT EdU 488 Thermo Fisher Scientific C10337
ECL Crescendo Millipore WBLUR0500

Experimental models: Cell lines

HCT166 ATCC CCL-247
NCI-H1299 ATCC CRL-5803
HEK293T ATCC CRL-3216
T98G ATCC CRL-1690
XP30RO Masutani et al.22 N/A
XP30RO:Polη Kannouche et al.13 N/A
XP30RO:GFP-Polη Kannouche et al. 13 N/A
MEFs wild-type Langerak et al.45 N/A
MEFs pcnaK164R Langerak al.45 N/A

Oligonucleotides

Control siRNA (Luciferase) 5′-CACGUACGCGG
AAUACUUCGATT-3′
N/A
Polη siRNA Durando et al.46 N/A
Polι siRNA Somyajit et al.23 N/A
Polκ siRNA Bétous et al.47 N/A
Rad18 siRNA Kermi et al.48 N/A

Recombinant DNA

pEGFP:Polη Kannouche et al.13 N/A
pCDNA3-HA-FLAGpcnaK164R This paper N/A

Software and algorithms

Cell Profiler 4.2.1 Stirling et al.49 N/A
Kaluza Beckman Coulter N/A
Zen Blue Zeiss N/A
Prism GraphPad N/A

Other

4–15% Criterion™ TGX™ Precast Midi Protein Gel, BioRad 5671085
Tris/Glycin Buffer BioRad 1610771EDU
Trans-Blot Turbo Transfer System BioRad 1704150
ChemiDoc Biorad N/A
Poly-D-Lysine Gibco A38904-01