REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Ubiquityl-PCNA (Lys164) | Cell Signaling Technology | RRID:AB_2798219 |
PCNA | Millipore | RRID:AB_11203836 |
α-tubulin | Sigma-Aldrich | RRID:AB_477583 |
Rad18 | Abcam | RRID:AB_1603946 |
CHK1 | Santa Cruz Biotechnology | RRID:AB_627257 |
CHK1pS345 | Cell Signaling Technology | RRID:AB_331212 |
γH2AX | Cell Signaling Technology | RRID:AB_2118009 |
H2AX | Cell Signaling Technology | RRID:AB_10694556 |
Polη | Abcam | RRID:AB_2756352 |
Polκ | Atlas Antibodies | RRID:AB_2668606 |
Polι | Proteintech | RRID:AB_2167009 |
RPA | Abcam | RRID:AB_302873 |
CPDs | Cosmo Bio | RRID:AB_1962813 |
USP1 | Proteintech | RRID:AB_2214314 |
Histone H2B | Abcam | RRID:AB_302612 |
Goat Anti-Rabbit Alexa 488 | Thermo Fisher Scientific | RRID:AB_2576217 |
Goat Anti-Rabbit Alexa 568 | Thermo Fisher Scientific | RRID:AB_10563566 |
Goat anti-Mouse Alexa 660 | Thermo Fisher Scientific | RRID:AB_2535722 |
Goat anti-Mouse Alexa 660 | Thermo Fisher Scientific | RRID:AB_2535722 |
Goat anti-Rabbit HRP | Cell Signaling Technology | RRID:AB_2099233 |
Goat anti-Mouse HRP | Cell Signaling Technology | RRID:AB_330924 |
Chemicals, peptides and recombinant proteins | ||
Camptothecin | Sigma-Aldrich | C9911 |
Cisplatin | Sigma-Aldrich | P4394 |
DAPI | Sigma-Aldrich | D9542 |
Formaldehyde | Thermo Fisher | 28908 |
Hydrogen Peroxyde | Sigma-Aldrich | 216763 |
Sodium fluoride | Sigma-Aldrich | 201154 |
β-Glycerophosphate | Sigma-Aldrich | G9422 |
Halt Proteases and Phosphatases inhibitors | Thermo Fisher Scientific | 78440 |
Perm/Wash buffer | BD biosciences | 554723 |
Prolong Diamond AntiFade | Thermo Fisher | P36961 |
RNAse A | EMD Millipore | 70856 |
Benzonase | Sigma-Aldrich | E1014-5KU |
BSA | Sigma-Aldrich | A2153 |
Critical commercial assays | ||
BCA Protein Assay Kit | Thermo Fisher Scientific | 23225 |
Click-iT EdU 488 | Thermo Fisher Scientific | C10337 |
ECL Crescendo | Millipore | WBLUR0500 |
Experimental models: Cell lines | ||
HCT166 | ATCC | CCL-247 |
NCI-H1299 | ATCC | CRL-5803 |
HEK293T | ATCC | CRL-3216 |
T98G | ATCC | CRL-1690 |
XP30RO | Masutani et al.22 | N/A |
XP30RO:Polη | Kannouche et al.13 | N/A |
XP30RO:GFP-Polη | Kannouche et al. 13 | N/A |
MEFs wild-type | Langerak et al.45 | N/A |
MEFs pcnaK164R | Langerak al.45 | N/A |
Oligonucleotides | ||
Control siRNA (Luciferase) | 5′-CACGUACGCGG AAUACUUCGATT-3′ |
N/A |
Polη siRNA | Durando et al.46 | N/A |
Polι siRNA | Somyajit et al.23 | N/A |
Polκ siRNA | Bétous et al.47 | N/A |
Rad18 siRNA | Kermi et al.48 | N/A |
Recombinant DNA | ||
pEGFP:Polη | Kannouche et al.13 | N/A |
pCDNA3-HA-FLAGpcnaK164R | This paper | N/A |
Software and algorithms | ||
Cell Profiler 4.2.1 | Stirling et al.49 | N/A |
Kaluza | Beckman Coulter | N/A |
Zen Blue | Zeiss | N/A |
Prism | GraphPad | N/A |
Other | ||
4–15% Criterion™ TGX™ Precast Midi Protein Gel, | BioRad | 5671085 |
Tris/Glycin Buffer | BioRad | 1610771EDU |
Trans-Blot Turbo Transfer System | BioRad | 1704150 |
ChemiDoc | Biorad | N/A |
Poly-D-Lysine | Gibco | A38904-01 |