TABLE 3.

Mean area under the ROC curve (AUC) for each method and simulation study, with either n = 2 or n = 4 replicates per condition. Standard deviation is included in the parenthesis next to the corresponding mean.

		Simulation study A		Simulation study B		Simulation study C		Simulation study D
	method	n = 2	n = 4	n = 2	n = 4	n = 2	n = 4	n = 2
1	babel	0.6 (0.007)	0.6 (0.006)	0.576 (0.008)	0.598 (0.007)	0.615 (0.077)	0.651 (0.09)	0.628 (0.024)
2	baySeq	0.88 (0.007)	0.907 (0.008)	0.692 (0.008)	0.746 (0.007)	0.861 (0.026)	0.891 (0.031)	0.751 (0.016)
3	DESeq2	0.8 (0.007)	0.86 (0.007)	0.646 (0.01)	0.748 (0.007)	0.864 (0.032)	0.895 (0.035)	0.718 (0.021)
4	edgeR	0.824 (0.018)	0.865 (0.015)	0.696 (0.007)	0.752 (0.007)	0.878 (0.035)	0.907 (0.036)	0.732 (0.035)
5	riboVI	0.908 (0.005)	0.928 (0.004)	0.827 (0.007)	0.864 (0.006)	0.903 (0.014)	0.939 (0.01)	0.841 (0.007)
6	RiboDiff	0.866 (0.005)	0.894 (0.005)	0.691 (0.007)	0.747 (0.007)	0.894 (0.019)	0.935 (0.024)	0.755 (0.013)
7	xtail	0.906 (0.004)	0.933 (0.004)	0.713 (0.008)	0.771 (0.007)	0.904 (0.034)	0.941 (0.03)	0.718 (0.021)