Table 1. Required and optional steps for arriving at specific output in the protocol.

	Basic Pipeline	2D Visuals Only	Advanced Pipeline
Protocol Steps	Steps 1–6	Steps 1 and 3–6	All Steps, 1–10
Output	• RAS coordinates • Reconstructed Surface • 2D Visuals of electrodes on the preoperative MRI • 3D Visuals of electrodes in the Freesurfer reconstructed brain	• RAS coordinates • 2D Visuals of electrodes on the preoperative MRI	• RAS coordinates • Reconstructed Surface • 2D Visuals • 3D Visuals • ELA probabilities • BIDS Files Structure • EVL localizations • Nearest Anatomical Structure • Grey/White Distances • De-faced Imaging

This table lists the three main use cases for this pipeline at the top with their corresponding steps and output below.