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. 2023 Jun 8;26(7):107070. doi: 10.1016/j.isci.2023.107070
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

HuC/HuD Neuronal Protein Mouse Monoclonal Antibody Molecular Probes/Thermofisher Cat#A-21271; RRID:AB_221448
Connexin-43 (E7N2R) XP Rabbit mAb Cell Signaling Techn Cat#83649

Chemicals, peptides, and recombinant proteins

Anti Mouse Cy3 Jackson Cat#715-165-150; RRID:AB_2340813
Monovalent AffiniPure Fab Fragment Cy3 Jackson Cat#711-167-003; RRID:AB_2340606
Donkey anti-rabbit Alexa Fluor 488 Thermofisher Cat#A-21206; RRID:AB_2535792
Goat- anti-mouse Alexa Fluor 568 Thermofisher Cat#A-11004; RRID:AB_2534072
DAPI Sigma-Aldrich Cat#D-9542
Ultrapure Low melting ThermoFisher Cat#16520050
MS-222, Tricaine Supelco #A5040-250G
Papain Sigma Cat#P4762
HBSS with CaCl2 and MgCl2 Gibco Cat#14025050
L-Cystein Sigma Cat#C7352
Tween 20 Sigma Cat#P7949-500
Triton X-100 Sigma Cat#T8787
BSA Sigma-Aldrich Cat#A3294
Horse serum Invitrogen Cat#16060-122
Glycerol Riedel-de Haën Cat#49770-1L-D
Trypan blue Sigma Cat#T8154

Critical commercial assays

RNAscope Multiplex Fluorescence Reagent Kit v2 Assay ACDbio Cat#323100
10X Chromium Single Cell 3′ Kit 10X Genomics Cat# 120237
Mmp17b probe ACDbio Custom
Opal 570 dye Akoya SKU FP1488001KT

Deposited data

Raw single-cell RNA-seq data This study GEO: GSE225510
Processed single-cell RNA-seq data This study GEO: GSE225510

Experimental models: Organisms/strains

Zebrafish tg(phox2bb:GFP) Nechiporuk et al. (2007) ZDB-TGCONSTRCT-070522-1
Zebrafish tg(8.3phox2bb:kaede) Harrison et al. (2014) ZDB-TGCONSTRCT-150305-1
Zebrafish tg(her4:GFP) Sang-Yeob et al.(2007) ZDB-TGCONSTRCT-070612-3
Zebrafish tg(gfap:GFP) Raymond et al. (2006) ZDB-TGCONSTRCT-070117-154
Zebrafish tg(vglut2:loxp-dsRed-loxP-GFP) Miyasaka et al. (2009) ZDB-TGCONSTRCT-070117-143
Zebrafish tg(gad1b:GFP) Satou et al. (2013) ZDB-TGCONSTRCT-131127-6

Software and algorithms

Cell Ranger v3.0.2 10X Genomics N/A
Fiji ImageJ National Center for Microscopy and Imaging Research: ImageJ Mosaic Plug-ins, RRID:SCR_001935
Leica LASX Leica Application Suite X, RRID:SCR_013673
Adobe illustrator Adobe Inc. N/A
Seurat v3 Stuart et al. (2019) https://satijalab.org/seurat/
Monocle 3 Trapnell et al. (2014) https://cole-trapnell-lab.github.io/monocle3/
R version 4.0.3 R Core Team (2022) https://www.R-project.org/
RStudio 1.2.5033 RStudio Team (2020) http://www.rstudio.com/
Prism 5 Graphpad GraphPad Prism, RRID:SCR_002798