Antibodies |
|
HuC/HuD Neuronal Protein Mouse Monoclonal Antibody |
Molecular Probes/Thermofisher |
Cat#A-21271; RRID:AB_221448
|
Connexin-43 (E7N2R) XP Rabbit mAb |
Cell Signaling Techn |
Cat#83649 |
|
Chemicals, peptides, and recombinant proteins |
|
Anti Mouse Cy3 |
Jackson |
Cat#715-165-150; RRID:AB_2340813
|
Monovalent AffiniPure Fab Fragment Cy3 |
Jackson |
Cat#711-167-003; RRID:AB_2340606
|
Donkey anti-rabbit Alexa Fluor 488 |
Thermofisher |
Cat#A-21206; RRID:AB_2535792
|
Goat- anti-mouse Alexa Fluor 568 |
Thermofisher |
Cat#A-11004; RRID:AB_2534072
|
DAPI |
Sigma-Aldrich |
Cat#D-9542 |
Ultrapure Low melting |
ThermoFisher |
Cat#16520050 |
MS-222, Tricaine |
Supelco |
#A5040-250G |
Papain |
Sigma |
Cat#P4762 |
HBSS with CaCl2 and MgCl2 |
Gibco |
Cat#14025050 |
L-Cystein |
Sigma |
Cat#C7352 |
Tween 20 |
Sigma |
Cat#P7949-500 |
Triton X-100 |
Sigma |
Cat#T8787 |
BSA |
Sigma-Aldrich |
Cat#A3294 |
Horse serum |
Invitrogen |
Cat#16060-122 |
Glycerol |
Riedel-de Haën |
Cat#49770-1L-D |
Trypan blue |
Sigma |
Cat#T8154 |
|
Critical commercial assays |
|
RNAscope Multiplex Fluorescence Reagent Kit v2 Assay |
ACDbio |
Cat#323100 |
10X Chromium Single Cell 3′ Kit |
10X Genomics |
Cat# 120237 |
Mmp17b probe |
ACDbio |
Custom |
Opal 570 dye |
Akoya |
SKU FP1488001KT |
|
Deposited data |
|
Raw single-cell RNA-seq data |
This study |
GEO: GSE225510
|
Processed single-cell RNA-seq data |
This study |
GEO: GSE225510
|
|
Experimental models: Organisms/strains |
|
Zebrafish tg(phox2bb:GFP) |
Nechiporuk et al. (2007) |
ZDB-TGCONSTRCT-070522-1 |
Zebrafish tg(8.3phox2bb:kaede) |
Harrison et al. (2014) |
ZDB-TGCONSTRCT-150305-1 |
Zebrafish tg(her4:GFP) |
Sang-Yeob et al.(2007) |
ZDB-TGCONSTRCT-070612-3 |
Zebrafish tg(gfap:GFP) |
Raymond et al. (2006) |
ZDB-TGCONSTRCT-070117-154 |
Zebrafish tg(vglut2:loxp-dsRed-loxP-GFP) |
Miyasaka et al. (2009) |
ZDB-TGCONSTRCT-070117-143 |
Zebrafish tg(gad1b:GFP) |
Satou et al. (2013) |
ZDB-TGCONSTRCT-131127-6 |
|
Software and algorithms |
|
Cell Ranger v3.0.2 |
10X Genomics |
N/A |
Fiji |
ImageJ |
National Center for Microscopy and Imaging Research: ImageJ Mosaic Plug-ins, RRID:SCR_001935 |
Leica |
LASX |
Leica Application Suite X, RRID:SCR_013673
|
Adobe illustrator |
Adobe Inc. |
N/A |
Seurat v3 |
Stuart et al. (2019) |
https://satijalab.org/seurat/ |
Monocle 3 |
Trapnell et al. (2014) |
https://cole-trapnell-lab.github.io/monocle3/ |
R version 4.0.3 |
R Core Team (2022) |
https://www.R-project.org/ |
RStudio 1.2.5033 |
RStudio Team (2020) |
http://www.rstudio.com/ |
Prism 5 |
Graphpad |
GraphPad Prism, RRID:SCR_002798
|