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. Author manuscript; available in PMC: 2024 Jul 9.
Published before final editing as: J Chem Theory Comput. 2023 Jan 9:10.1021/acs.jctc.2c00725. doi: 10.1021/acs.jctc.2c00725

Figure 7:

Figure 7:

Illustration of a thermodynamic graph which involves 4 ligands (L66, L67, L74, and L75) that target the PTP1B.65,66 The thermodynamic graph is constructed that involves all 6 possible alchemical transformation between ligands. The red-colored atoms shown are the defined softcore regions chosen in accord with the MCS-Enw atom-mapping algorithm described in the Methods section.