Table 1.
Mean, standard deviation (SD), and coefficient of variation (CV) of observed frequencies of High risk, low-risk, and Undetermined-risk HPV type-specific infections detected by NGS and verified by TS-PCR
| HPV TYPE | NGS | TS- PCR | MEAN | SD | CV | |
|---|---|---|---|---|---|---|
| Low-risk HPV types | HPV71 | 62 | 24 | 38.6 | 19 | 2.03 |
| HPV6 | 31 | 21 | 25.5 | 5 | 5.10 | |
| HPV32 | 3 | 1 | 1.73 | 1 | 1.73 | |
| HPV7 | 2 | 1 | 1.41 | 0.5 | 2.82 | |
| HPV43 | 1 | 1 | 1 | 0 | 0 | |
| HPV90 | 1 | 1 | 1 | 0 | 0 | |
| HPV91 | 1 | 1 | 1 | 0 | 0 | |
| High-risk HPV types | HPV16 | 43 | 33 | 37.7 | 5 | 7.53 |
| HPV82 | 54 | 23 | 35.2 | 15.5 | 2.27 | |
| HPV18 | 12 | 6 | 8.49 | 3 | 2.83 | |
| HPV85 | 3 | 1 | 1.73 | 1 | 1.73 | |
| HPV31 | 2 | 1 | 1.41 | 0.5 | 2.83 | |
| HPV39 | 2 | 1 | 1.41 | 0.5 | 2.83 | |
| HPV66 | 2 | 1 | 1.41 | 0.5 | 2.83 | |
| HPV33 | 1 | 1 | 1 | 0 | 0 | |
| HPV52 | 1 | 1 | 1 | 0 | 0 | |
| HPV58 | 1 | 1 | 1 | 0 | 0 | |
| HPV59 | 1 | 1 | 1 | 0 | 0 | |
| Undetermined-risk HPV types | HPV14 | 21 | 15 | 17.7 | 3 | 5.92 |
| HPV20 | 23 | 11 | 15.9 | 6 | 2.65 | |
| HPV196 | 17 | 10 | 13.0 | 3.5 | 3.73 | |
| HPV152 | 14 | 10 | 11.8 | 2 | 5.91 | |
| HPV21 | 20 | 9 | 13.4 | 5.5 | 2.44 | |
| HPV114 | 1 | 1 | 1 | 0 | 0 | |
| HPV118 | 1 | 1 | 1 | 0 | 0 |