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. 2023 Jun 29;21(6):e3002158. doi: 10.1371/journal.pbio.3002158

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© 2023 Skibbe et al

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Fig 4 — Interface of the BMCR-Explorer and the Nora-StackApp. Each example shows 2 anterograde tracers in the BMCR reference space. (a) The BMCR-Explorer shows high-resolution microscopy images of neural tracers from different individuals in a common image space. Panel (b) shows the interface for data selection. (c) The cursor position is shown simultaneously in a cortical flatmap and the current coronal section. (d) The Nora-StackApp viewer can show a number of tracer images simultaneously in 3D that facilitates comparative studies. The viewer supports arbitrary virtual sectioning including sagittal, coronal, or transversal sections and can interact with the BMCR-Explorer. The same location can be opened in high resolution in the BMCR-Explorer. Data availability: Panel (a) shows data from 2 marmoset brains with the IDs R04_0079 and R01_0098, panel (c) shows data from R01_0046 and R01_0098, and panel (d) shows data from R04_0080 and R04_0095. The data is publicly accessible from the BMCR-Explorer (http://bmca.riken.jp/), and Nifti stacks can be downloaded from our repository (https://doi.org/10.60178/cbs.20230630-001). BMCR, Brain/MINDS Marmoset Connectivity Resource.