Table 2.
Publications | Phenotype | Diagnosis Criteria | PTEN | PTEN variant | Genetic analysis | ||
---|---|---|---|---|---|---|---|
Technique | Blood Allele frequency | Somatic Allele Frequency | |||||
Gammon et al. (2013) [15] | CS | yes | NM_000314.6 | c.966A > G; 967delA | Sanger | < 10% | NA |
Pritchard et al. (2013) [16] | CS | yes | NM_000314.6 | c.767_768delAG; p.(Glu256Val fs*41) | NGS (depth > 1000X) | 1.70% | 25–50% (skin, cerebellar, colonic, endocervical tissues) using Sanger |
Salo-Mullen et al. (2013) [17] | CS | yes | NI | PTEN partial deletion (at least exons 6–9) | aCGH, MLPA | 47 ± 10% of cells | NA |
Steffan et al. (2014) [14] | CS | yes | NM_000314.6 | c.675 T > A; p.(Tyr225*) | Sanger | < 20% | NA |
Golas et al. (2018) [18] | BRRS | yes | NM_000314.6 | 10q23.1q23.3 deletion | aCGH, MLPA | 50% | buccal mucosa |
Golas et al. (2018) [18] | BRRS | yes | NM_000314.6 | 10q23.1q23.3 deletion | Sanger, aCGH, MLPA | < 10% | thyroid, colonic polyp |
Goldenberg et al. (2019) [19] | ASD | yes | NM_000314.6 | c970dup; p.(Asp324Gly fs*3) | NGS (depth > 500X), QMPSF | 3.50% | 11–30% (buccal, swab, neural lesion) |
Rofes et al. (2022) [13] | CS | yes | NM_000314.6 | c.331 T > C; p.(Trp111Arg) | NGS | 22.50% | 6–32,5% (sperm, buccal swab, skin) |
Hendricks et al. (2022) [20] | CS | yes | NM_000314.6 | c.493-2A > G; p? | NGS | < 1% (depth not reported) | 21–23% (vascular malformation, buccal swab) |
Hendricks et al. (2022) [20] | CS | yes | NM_000314.6 | c.284C > T | NGS | 11% | 12% (buccal swab) |
Cavaillé et al. (2023) | CS | yes | NM_000314.6 | c.389G > A; p.(Arg130Gln) | NGS | 0,7% (17/2285 reads) | 12–59% (ganglioneuroma, papilloma, diapneusia fibroid, non-tumoral stomach tissue) |
Most of mosaic variants was found from blood samples. Two cases were associated with blood allele frequency < 1%. CS Cowden Syndrome, BRRS Bannayan-Riley-Ruvalcaba syndrome, ASD autism-macrocephaly syndrome, NGS Next Generation Sequencing, MLPA Multiplex Ligation-dependent Probe Amplification, aCGH Array Comparative Genomic Hybridization, QMPSF, quantitative multiplex PCR of short fluorescent fragments