Table 3.
Gene and regulatory region annotation of CpGs in the ‘5 stable CpG GA clock’
| CpG ID | Gene (Ensembl annotation) | Gene Ensembl ID | Regulatory region type | Regulatory region Ensembl ID | Genes controlled by regulatory region |
|---|---|---|---|---|---|
| cg04347477 | NCOR2 | ENSG00000196498 | Promoter | ENSR00001046350 | – |
| cg11387576 | – | – | Enhancer | ENSR00001448127 | SAXO1, PSMC3P1, HSALNG0070247, RF00017-7032, ADAMTSL1, HSALNG0070244 |
| cg25975961 | – | – | Promoter flanking region | ENSR00001734862 | – |
| CTCF binding site | ENSR00000414350 | – | |||
| cg21180953 | SETBP1 | ENSG00000152217 | Promoter flanking region | ENSR00001902774 | Lnc-EPG5-10, 5MWI_A-078, SETBP1, SLC14A2 |
| cg18183624 | IGF2BP1 | ENSG00000159217 | Promoter | ENSR00000095417 | IGF2BP1, ENSG00000250838, ENSG00000262837; UBE2Z; ENSG00000204584, FAM117A; LOC124904116, KAT7, PRAC1, PRAC2, HOXB13, TAC4, CALCOCO2, HOXB5, NXPH3, NFE2L1-DT, ENSG00000251461, ATP5MC1, LOC124904020, B4GALNT2 |