REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
CCL5 | R&D Systems | AF-278 RRID:AB_354440 |
MDA 5 | Invitrogen | 700360 |
CD8 | Bio Rad | MCA1817 RRID:AB_322868 |
PD-L1 SP263 | Ventana | 740–4907 |
RIG-I | Bio Rad | AHP1776 RRID:AB_2175702 |
IRF7 | Aviva | OABF01189 |
IFI27 | Thermo fisher | BS-15549R |
ds RNA J2 | Scicons | 1510 |
ds RNA K1 | Scicons | 1502 |
IFIT1 | abcam | ab118062 RRID:AB_10901878 |
IRF-9 | abcam | ab126940 RRID:AB_11129364 |
Ki-67 | abcam | ab16667 RRID:AB_302459 |
pSTAT1 | Cell Signaling | 9167 RRID:AB_561284 |
Critical commercial assays | ||
Dako envision Flex Kit | Agilent | K8023 |
Ventana DAB | Roche | 760–500 |
Dako High pH retrieval buffer | Agilent | GV804 |
Dako Low pH retrieval buffer | Agilent | GV805 |
Ventana CC1 | Roche | 950–224 |
Software and algorithms | ||
ESTIMATE | R -Forge | N/A |
TIMER 2.0 | http://timer.cistrome.org/ | N/A |
Gene Set Variation Analysis | R Bioconductor | RRID:SCR_021058 |
Corrr | Github | N/A |
Hmisc | CRAN | RRID:SCR_02249 |
Corrplot | Github | RRID:SCR_023081 |
Pheatmap | R Bioconductor | RRID:SCR_016418 |
Morpheus | Broad Institute | RRID:SCR_017386 |
Prism | GraphPad | RRID:SCR_002798 |
Aperio ImageScope | Leica | RRID:SCR_020993 |
STATA SE | STATA | RRID:SCR_012763 |
Other | ||
Clinical trial | NCT01928576 | N/A |
TCGA LUAD RNAseq | Broad GDAC Firehose | RRID:SCR_003193 |
TCGA LUSC RNAseq | Broad GDAC Firehose | RRID:SCR_003193 |
ImmGen | Immunological Genome Project Consortium | RRID:SCR_021792 |