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. 2023 Jun 10;26(7):107095. doi: 10.1016/j.isci.2023.107095
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

CCL5 R&D Systems AF-278
RRID:AB_354440
MDA 5 Invitrogen 700360
CD8 Bio Rad MCA1817
RRID:AB_322868
PD-L1 SP263 Ventana 740–4907
RIG-I Bio Rad AHP1776 RRID:AB_2175702
IRF7 Aviva OABF01189
IFI27 Thermo fisher BS-15549R
ds RNA J2 Scicons 1510
ds RNA K1 Scicons 1502
IFIT1 abcam ab118062
RRID:AB_10901878
IRF-9 abcam ab126940
RRID:AB_11129364
Ki-67 abcam ab16667
RRID:AB_302459
pSTAT1 Cell Signaling 9167
RRID:AB_561284

Critical commercial assays

Dako envision Flex Kit Agilent K8023
Ventana DAB Roche 760–500
Dako High pH retrieval buffer Agilent GV804
Dako Low pH retrieval buffer Agilent GV805
Ventana CC1 Roche 950–224

Software and algorithms

ESTIMATE R -Forge N/A
TIMER 2.0 http://timer.cistrome.org/ N/A
Gene Set Variation Analysis R Bioconductor RRID:SCR_021058
Corrr Github N/A
Hmisc CRAN RRID:SCR_02249
Corrplot Github RRID:SCR_023081
Pheatmap R Bioconductor RRID:SCR_016418
Morpheus Broad Institute RRID:SCR_017386
Prism GraphPad RRID:SCR_002798
Aperio ImageScope Leica RRID:SCR_020993
STATA SE STATA RRID:SCR_012763

Other

Clinical trial NCT01928576 N/A
TCGA LUAD RNAseq Broad GDAC Firehose RRID:SCR_003193
TCGA LUSC RNAseq Broad GDAC Firehose RRID:SCR_003193
ImmGen Immunological Genome Project Consortium RRID:SCR_021792