Table 3.
MDR Interaction Analysis between SNPs and Tobacco (Gene-Environment Interaction)
| MDR model | Balanced accuracy CV training |
Balanced accuracy CV testing | CV consistency |
Permutation test ‘p’ value |
|---|---|---|---|---|
| Tobacco | 0.682 | 0.682 | 10/10 | <0.001 |
| Tobacco - CYP1A1*2C, rs4646903 | 0.6835 | 0.6694 | 7/10 | <0.001 |
| Tobacco,- CYP1A1*2C, rs4646903, -p53 Intron 3 rs17878362 - Intron 6 rs1625895 | 0.7047 | 0.6333 | 7/10 | 0.01 |
CVC, Cross Validation Consistency; p-values as calculated after 1000 permutations