Table 1.
Areas of interest (AOIs) detected by BAGEL4 for different Bacteroidales families.
| Areas of interest (AOIs) | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Family | Amount of genomes | Total AOI | rSAM | rSAM + LanC | rSAM + GlyS | rSAM + LanC + GlyS | rSAM + YcaO | rSAM + YcaO + GlyS | rSAM + ThioE | rSAM + YcaO + ThioE | ThioE | ThioE+ YcaO | LanC | LanD | LanM | LanM + LanC | GlyS | LasC | ComX1 |
| Bacteroidaceae | 623 | 911 | 578 | 205 | 1 | 16 | 7 | 1 | 0 | 2 | 76 | 2 | 17 | 1 | 0 | 0 | 0 | 0 | 5 |
| Balneicellaceae | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Barnesiellaceae | 3 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Dysgonomonadaceae | 13 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Lentimicrobiaceae | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Muribaculaceae | 9 | 9 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| Odoribacteraceae | 28 | 18 | 13 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Paludibacteraceae | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Porphyromonadaceae | 119 | 52 | 40 | 1 | 0 | 0 | 5 | 2 | 0 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 0 |
| Prevotellaceae | 195 | 174 | 152 | 2 | 0 | 0 | 1 | 0 | 0 | 4 | 2 | 8 | 3 | 0 | 1 | 1 | 0 | 0 | 0 |
| Rikenellaceae | 35 | 10 | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Tannerellaceae | 106 | 155 | 52 | 54 | 6 | 25 | 1 | 0 | 2 | 0 | 4 | 0 | 9 | 0 | 0 | 0 | 2 | 0 | 0 |
| Tenuifilaceae | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Williamwhitmaniaceae | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| TOTAL | 1,136 | 1,340 | 858 | 263 | 7 | 41 | 15 | 3 | 3 | 6 | 86 | 10 | 36 | 2 | 1 | 1 | 2 | 1 | 5 |
See also Supplementary Table S4 for the full data set of designated AOIs per strain. rSAM, radical SAM; LanC, Lanthionine synthetase C-like; GlyS, Peptide S-glycosyltransferase; YcaO, YcaO domain containing protein; ThioE, Dehydrogenase; LanD, Decarboxilase; LanM, Type II lanthipeptide biosynthesis protein; LasC, Macrolactam synthetase.