AOI	Area of interest
AS	Alignment score
BGC	Biosynthetic gene cluster
ComX	Precursor peptide of the quorum-sensing pheromone
GlyS	S-glycosyltransferase
HMM	Hidden Markov Model
HMP	Human microbiome project
LanB	Lanthipeptide dehydratase
LanC	Lanthipeptide cyclase
LanD	Lanthipeptide C-terminal decarboxylase
LanM	Class II lanthionine synthetase
LasC	Lactam synthetase (involved in Lasso peptide biosynthesis) homolog to Asn synthetase
MSA	Multiple sequence alignment
MFP	Membrane fusion protein
OMP	Outer membrane protein
ORF	Open reading frame
PCAT	Peptidase-containing ATP-binding transporter
PTM	Post-translational modification
RiPP	Ribosomally synthesized and post-translationally modified peptide
RMSD	Root-mean-square deviation
RPKM	Read per Kilobase per Million mapped reads
RRE	RiPP precursor recognition element
rSAM	Radical S-adenosylmethionine
SSN	Sequence similarity network
ThioE	Dehydrogenase (involved in thiopeptide, LAP, and cyanobactin biosynthesis)
TRP	Tetratricopeptide-like helical repeat