Table 3.
Prevalence of phenotypic group-3 microorganisms detected by urine culture, PCR, and PM of suspected UTI cases (n = 47).
| Microorganism | Type | Culture (+) | PCR (+) |
NGS (+) |
|---|---|---|---|---|
| Acinetobacter baumannii | Bacteria | 1 | Negative | 0 |
| Aerococcus urinae | Bacteria | 0 | Negative | 6 |
| Candida albicans | Fungi | 0 | 2 | 0 |
| Candida glabrata | Fungi | 0 | 2 | 1 |
| Candida parapsilosis | Fungi | 0 | 2 | 0 |
| Citrobacter freundii | Bacteria | 3 | 1 | 4 |
| Corynebacterium pseudogenitalium | Bacteria | 0 | No target | 4 |
| Corynebacterium urealyticum | Bacteria | 0 | No target | 3 |
| Enterobacter cloacae complex | Bacteria | 2 | 13 | 6 |
| Enterococcus faecalis | Bacteria | 7 | 12 | 12 |
| Enterococcus faecium | Bacteria | 1 | 9 | 2 |
| Enterococcus raffinosus | Bacteria | 0 | No target | 1 |
| Escherichia coli | Bacteria | 14 | 13 | 22 |
| Klebsiella aerogenes | Bacteria | 1 | 1 | 1 |
| Klebsiella. oxytoca | Bacteria | 2 | 3 | 10 |
| Klebsiella pneumoniae | Bacteria | 1 | 9 | 7 |
| Klebsiella quasipneumoniae | Bacteria | 0 | No target | 2 |
| Klebsiella variicola | Bacteria | 0 | No target | 2 |
| Morganella morganii | Bacteria | 0 | 6 | 3 |
| Proteus mirabilis | Bacteria | 3 | 7 | 5 |
| Pseudomonas aeruginosa | Bacteria | 0 | 6 | 4 |
| Salmonella enterica | Bacteria | 0 | No target | 3 |
| Serratia marcescens | Bacteria | 0 | No target | 1 |
| Staphylococcus aureus | Bacteria | 1 | 1 | 1 |
| Streptococcus agalactiae | Bacteria | 0 | 3 | 2 |