TABLE 4.
Pairwise SNPs differences among K. pneumoniae and K. quasipneumoniae subsp. quasipneumoniae isolates based on high-resolution SNP analysis (using Snippy workflow)
| Organism and sequence type (no. of samples) | No. of characters | Mean pairwise SNPs among samples in Qatar (range, distance to reference genome) | Reference genome used in Snippy pipeline |
|---|---|---|---|
| K. pneumoniae | |||
| ST147 (13) | 485 | 87.5 (0–139) | NZ_CP012745.1.fasta |
| ST231 (7) | 361 | 86.7 (68–105) | GCF_002909775.1_ASM290977v2_genomic.fna |
| ST11 (5) | 348 | 101.6 (3–170) | GCF_003931835.1_ASM393183v1_genomic.fna |
| ST383 (4) | 331 | 112.8 (44–183) | GCF_001611055.1_ASM161105v1_genomic.fna |
| K. quasipneumoniae subsp. quasipneumoniae | |||
| ST196 (9) | 227 | 3.9 (0–10) | GCF_003146655.1_ASM314665v1_genomic.fna |
| ST1416 (4) | 137 | 2 (0–4) | GCF_005503875.1_ASM550387v1_genomic.fna |