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Wall-clock running times of ASTRID-2 and ASTRID-3, which differ only in the calculation of the distance matrix. Time are shown in seconds, median across 50 replicates
| Running time (s) | Distance matrix | FastME | ||
|---|---|---|---|---|
| ASTRID-2 | ASTRID-3 | ASTRID-2 | ASTRID-3 | |
| S101 (seqlen = 400, n = 101) | 0.32 | 0.07 | 0.00 | 0.00 |
| MC5 (n = 201) | 0.53 | 0.15 | 0.01 | 0.01 |
| MC11H (n = 1001) | 6.37 | 1.75 | 1.82 | 1.66 |
