Table 3. Vector-Borne pathogens and oral-fecal pathogens detected in reptiles by blood smear or molecular identification.

Species of reptile (infected/total)	Vector-Borne pathogen					Oral-fecal pathogen
	Gametocytes present in blood smears	cPCR (16S rRNA)	cPCR (18S rRNA)	cPCR (gltA)	dqPCR (ITS1)	cPCR (cox1)	nPCR (18S rRNA)
Chamaeleo chamaeleon (4/30)			(1) KC696565 Hepatozoon sp. (99.8%)	(1) MK923743 Rickettsia asembonensis (100%)	(1) Leishmania tarentolae (ct 35.31)	(1) CP054157 Proteus vulgaris (92%)
Eumeces algeriensis (0/1)
Blanus mettetali (1/5)							(1) MH912997 Cryptosporidium sp. apodemus genotype I (92%)
Testudo graeca (6/14)						(1) HQ317434 Enterobius vermicularis (89%) (1) MH427272 Syphacia obvelata (86%) (2) KJ939328 Trypanoxyuris atelis (83%) (2) KU285486 Trypanoxyuris multilabiatus (83%)
Bitis arietans (18/20)	(10/20)	(1) EU780455 Candidatus Midichloria mitochondrii (100%)	(1) KC696565 Hepatozoon sp. (99.8%)	(4) AP019563 Rickettsia asiatica (97.7%)		(1) KY498478 Neurospora crassa (91.1%)	(1) CP032295 Morganella morganii (98.5%)
Hemorrhois hippocrepis (1/1)	(1/1)	(1) MK041546 Anaplasma sp. 98.79%
Malpolon insignitus (3/9)	(1/9)					(1) KR780799 Penetrocephalus ganapattii (83%) (1) KY498478 Neurospora crassa (92%)
Malpolon monspessulanus (23/28)	(13/28)	(1) MW790941 Anaplasma sp. (99.69%) (2) MT126499 Anaplasma phagocytophilum (99.7%)	(1) KC696565 Hepatozoon sp. (99.8%)		(1) Leishmania tarentolae (ct 34.56)	(1) MH463505 Mesocestoides sp. (83%) (1) MH427272 Syphacia obvelata (84%) (2) KJ939328 Trypanoxyuris atelis (83%)	(1) CP064828 Morganella morganii (98.5%)
Naja haje (3/10)	(1/10)						(1) MK394156 Diutina catenulate (99.8%) (1) CP050335; Pseudomonas aeruginosa (99.5%)
Total (59/118)	(26/118)	(5/118)	(3/118)	(5/118)	(2/118)	(14/118)	(5/118)