Table 2.
Common name | Species/population | INSDC Accession | Assembly size (bp) | Assembly size (Mb) | Length in gap-free scaffolds (bp) | Length in gap-free scaffolds (%) | No. Scaffolds | Contig N50 (bp) | Scaffold N50 (bp) | Scaffold N50 (Mb) | L50 scaffold count | Max scaffold length (bp) | Min scaffold length (bp) | GC % |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
African cassava whitefly | B. tabaci SSA1-SG1-Ug | GCA_902825415.1 | 657,779,510 | 657.78 | 654,458,526 | 99.50 | 955 | 1,064,702 | 2,827,586 | 2.83 | 52 | 22,889,223 | 9,897 | 39.39 |
African cassava whitefly | B. tabaci SSA1-SG1-Ng | GCA_902825425.1 | 656,260,349 | 656.26 | 656,260,349 | 100.00 | 4,493 | 458,228 | 458,228 | 0.46 | 294 | 9,533,218 | 225 | 39.59 |
African cassava whitefly | B. tabaci SSA2-Ng | GCA_903994125.1 | 625,325,389 | 625.32 | 625,325,389 | 100.00 | 785 | 7,807,116 | 7,807,116 | 7.81 | 23 | 42,504,780 | 1,535 | 39.62 |
African cassava whitefly | B. tabaci SSA3-Ng | GCA_903994115.1 | 648,308,134 | 648.31 | 648,308,134 | 100.00 | 2,278 | 2,199,268 | 2,199,268 | 2.20 | 56 | 23,475,035 | 1,709 | 39.60 |
Indian cassava whitefly | B. tabaci Asia II-5 | GCA_903994105.1 | 616,120,436 | 616.12 | 616,120,436 | 100.00 | 227 | 10,839,054 | 10,839,054 | 10.84 | 14 | 53,342,825 | 554 | 39.63 |
Sweet-potato whitefly | B. tabaci Uganda-1 | GCA_903994095.1 | 630,407,635 | 630.41 | 612,247,491 | 97.11 | 5,713 | 91,652 | 177,279 | 0.18 | 1,121 | 1,182,621 | 2,406 | 38.36 |
Silverleaf whitefly | B. argentifolii | GCA_001854935.1 | 615,001,830 | 615.00 | 600,627,672 | 97.66 | 19,750 | 102,104 | 3,232,964 | 3.23 | 56 | 11,178,615 | 254 | 38.72 |
Tobacco whitefly | B. tabaci sensu stricto | GCA_003994315.1 | 658,280,412 | 658.28 | 635,234,674 | 96.50 | 4,975 | 54,255 | 436,791 | 0.44 | 421 | 2,857,362 | 221 | 38.27 |
Greenhouse whitefly | T. vaporariorum | GCA_011764245.1 | 787,368,623 | 787.36 | 785,766,123 | 99.79 | 397 | 500,116 | 69,978,400 | 69.97 | 5 | 97,306,886 | 1,000 | 38.91 |
Pea aphid | A. pisum | GCA_000142985.2 | 541,675,471 | 541.68 | 499,891,253 | 92.29 | 23,924 | 28,201 | 518,546 | 0.52 | 280 | 3,073,041 | 200 | 27.46 |
Anopheles mosquito | A. gambiae | GCA_000005575.1 | 283,349,351 | 283.35 | 260,133,033 | 91.81 | 831 | 169,164 | 49,364,325 | 49.36 | 3 | 61,545,105 | 885 | 40.67 |
Fruit fly | D. melanogaster | GCA_000001215.4 | 143,726,002 | 143.73 | 142,573,910 | 99.20 | 1,870 | 21,485,538 | 25,286,936 | 25.29 | 3 | 32,079,331 | 544 | 41.67 |
Flower beetle | T. castaneum | GCA_000002335.3 | 165,928,604 | 165.93 | 152,415,650 | 91.86 | 2,081 | 86,006 | 15,265,516 | 15.27 | 5 | 31,381,287 | 248 | 31.10 |
The Bemisia tabaci s.l. genome assembly statistics in comparison to selected (publicly available) insect genomes with INSDC accession numbers. Whitefly genome assembly sizes ranged from 615 to 787 Mb, which was consistently larger than the genomes of Acyrthosiphon pisum, Anopheles gambiae, Drosophila melanogaster and Tribolium castaneum