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. 2023 Jul 19;24:408. doi: 10.1186/s12864-023-09474-3

Table 2.

Genome assembly statistics and comparison

Common name Species/population INSDC Accession Assembly size (bp) Assembly size (Mb) Length in gap-free scaffolds (bp) Length in gap-free scaffolds (%) No. Scaffolds Contig N50 (bp) Scaffold N50 (bp) Scaffold N50 (Mb) L50 scaffold count Max scaffold length (bp) Min scaffold length (bp) GC %
African cassava whitefly B. tabaci SSA1-SG1-Ug GCA_902825415.1 657,779,510 657.78 654,458,526 99.50 955 1,064,702 2,827,586 2.83 52 22,889,223 9,897 39.39
African cassava whitefly B. tabaci SSA1-SG1-Ng GCA_902825425.1 656,260,349 656.26 656,260,349 100.00 4,493 458,228 458,228 0.46 294 9,533,218 225 39.59
African cassava whitefly B. tabaci SSA2-Ng GCA_903994125.1 625,325,389 625.32 625,325,389 100.00 785 7,807,116 7,807,116 7.81 23 42,504,780 1,535 39.62
African cassava whitefly B. tabaci SSA3-Ng GCA_903994115.1 648,308,134 648.31 648,308,134 100.00 2,278 2,199,268 2,199,268 2.20 56 23,475,035 1,709 39.60
Indian cassava whitefly B. tabaci Asia II-5 GCA_903994105.1 616,120,436 616.12 616,120,436 100.00 227 10,839,054 10,839,054 10.84 14 53,342,825 554 39.63
Sweet-potato whitefly B. tabaci Uganda-1 GCA_903994095.1 630,407,635 630.41 612,247,491 97.11 5,713 91,652 177,279 0.18 1,121 1,182,621 2,406 38.36
Silverleaf whitefly B. argentifolii GCA_001854935.1 615,001,830 615.00 600,627,672 97.66 19,750 102,104 3,232,964 3.23 56 11,178,615 254 38.72
Tobacco whitefly B. tabaci sensu stricto GCA_003994315.1 658,280,412 658.28 635,234,674 96.50 4,975 54,255 436,791 0.44 421 2,857,362 221 38.27
Greenhouse whitefly T. vaporariorum GCA_011764245.1 787,368,623 787.36 785,766,123 99.79 397 500,116 69,978,400 69.97 5 97,306,886 1,000 38.91
Pea aphid A. pisum GCA_000142985.2 541,675,471 541.68 499,891,253 92.29 23,924 28,201 518,546 0.52 280 3,073,041 200 27.46
Anopheles mosquito A. gambiae GCA_000005575.1 283,349,351 283.35 260,133,033 91.81 831 169,164 49,364,325 49.36 3 61,545,105 885 40.67
Fruit fly D. melanogaster GCA_000001215.4 143,726,002 143.73 142,573,910 99.20 1,870 21,485,538 25,286,936 25.29 3 32,079,331 544 41.67
Flower beetle T. castaneum GCA_000002335.3 165,928,604 165.93 152,415,650 91.86 2,081 86,006 15,265,516 15.27 5 31,381,287 248 31.10

The Bemisia tabaci s.l. genome assembly statistics in comparison to selected (publicly available) insect genomes with INSDC accession numbers. Whitefly genome assembly sizes ranged from 615 to 787 Mb, which was consistently larger than the genomes of Acyrthosiphon pisum, Anopheles gambiae, Drosophila melanogaster and Tribolium castaneum

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