Table 7.
Accuracy | |||||||
---|---|---|---|---|---|---|---|
Wilcoxon P-value | AMAP | AMPDiscover-RF | AMPDiscover-RNN | AMPfun | iAMP-CA2L | iAMP-RAAC | dbAMP |
AMPDiscover-RF | – | ||||||
AMPDiscover-RNN | – | – | |||||
AMPfun | – | – | – | ||||
iAMP-CA2L | 0.008362 | – | – | – | |||
iAMP-RAAC | – | – | – | 0.006714 | – | ||
dbAMP | – | – | – | 0.030151 | – | 0.035339 | |
iAMPCN | 6.10E−05 | – | – | 6.10E−05 | 0.000122 | 6.10E−05 | 6.10E−05 |
F1 | |||||||
Wilcoxon P-value | AMAP | AMPDiscover-RF | AMPDiscover-RNN | AMPfun | iAMP-CA2L | iAMP-RAAC | dbAMP |
AMPDiscover-RF | – | ||||||
AMPDiscover-RNN | – | – | |||||
AMPfun | – | – | – | ||||
iAMP-CA2L | 0.187622 | – | – | – | |||
iAMP-RAAC | – | – | – | 0.106995 | – | ||
dbAMP | – | – | – | 0.002014 | – | 0.00061 | |
iAMPCN | 0.000122 | – | – | 6.10E−05 | 0.000122 | 0.000122 | 0.000305 |
MCC | |||||||
Wilcoxon P-value | AMAP | AMPDiscover-RF | AMPDiscover-RNN | AMPfun | iAMP-CA2L | iAMP-RAAC | dbAMP |
AMPDiscover-RF | – | ||||||
AMPDiscover-RNN | – | – | |||||
AMPfun | – | – | – | ||||
iAMP-CA2L | 0.008362 | – | – | – | |||
iAMP-RAAC | – | – | – | 0.008362 | – | ||
dbAMP | – | – | – | 0.035339 | – | 0.047913 | |
iAMPCN | 6.10E−05 | 6.10E−05 | 6.10E−05 | 6.10E−05 | 0.000183 | 6.10E−05 | 6.10E−05 |
AUC | |||||||
Wilcoxon P-value | AMAP | AMPDiscover-RF | AMPDiscover-RNN | AMPfun | iAMP-CA2L | iAMP-RAAC | dbAMP |
AMPDiscover-RF | – | ||||||
AMPDiscover-RNN | – | – | |||||
AMPfun | – | – | – | ||||
iAMP-CA2L | 0.008362 | – | – | – | |||
iAMP-RAAC | – | – | – | 0.072998 | – | ||
dbAMP | – | – | – | 0.035339 | – | 0.00116 | |
iAMPCN | 6.10E−05 | – | – | 6.10E−05 | 0.000122 | 6.10E−05 | 6.10E−05 |
‘–’ means that the number of functional activities that both tools can predict is less than 5.