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. 2023 Jul 20;14:4400. doi: 10.1038/s41467-023-39985-2

Fig. 3. GeneVector Accurately Classifies Cells in TICA Cell Atlas.

Fig. 3

A Cells annotated by cell type summarized from the original TICA provided annotations. B Original annotations provided in TICA (Tumor Immune Cell Atlas). C GeneVector classification results for each cell type. D Confusion matrix comparing GeneVector classification with summarized cell types. E Confusion matrix using the same gene markers with CellAssign shows decreased performance in myeloid cells. F Pseudo-probability values for each summarized cell type. G Marker gene log-normalized expression over all cells grouped by GeneVector classification. H Original annotations reassigned by GeneVector. I Marker gene mean log-normalized expression for cell type reassignments highlights misclassifications in B/Plasma cells and doublet transcriptional signatures in T and myeloid cells. Source data provided as a Source Data file.