The amount, distribution and context of methylated cytosine through the whole genome after spinal cord injury
	Total C’s analysed	mC in CpG	mC in CHG	mC in CHH	mC in CH	total mC	UmCin CpG	total CpG	UmCin CHG	total CHG	UmCin CHH	total CHH	UmCin CH	Total CH
shamJL	842,429,538	54,994,269	2,315,844	5,327,073	7,642,917	62,637,186	62,114,492	117,108,761	212,906,623	215,222,467	504,771,237	510,098,310	932,900,327	940,543,244
sham_2	685,890,086	44,962,151	1,759,987	4,022,632	5,782,619	50,744,770	53,746,413	98,708,564	173,979,806	175,739,793	407,419,097	411,441,729	757,138,696	762,921,315
sham_3	669,216,659	43,981,658	1,750,129	3,991,321	5,741,450	49,723,108	52,503,230	96,484,888	170,074,956	171,825,085	396,915,365	400,906,686	738,815,406	744,556,856
D0_1	740,058,636	47,277,785	1,938,121	4,514,325	6,452,446	53,730,231	53,951,243	101,229,028	185,587,957	187,526,078	446,789,205	451,303,530	819,903,240	826,355,686
D0_2	802,397,693	52,113,439	1,933,781	4,185,911	6,119,692	58,233,131	61,963,626	114,077,065	202,970,595	204,904,376	479,230,341	483,416,252	887,105,312	893,225,004
D0_3	835,534,708	54,163,266	1,998,758	5,012,725	7,011,483	61,174,749	55,864,246	110,027,512	203,860,943	205,859,701	514,634,770	519,647,495	924,355,414	931,366,897
Dl_l	563,865,388	35,026,270	1,226,164	2,950,892	4,177,056	39,203,326	39,677,439	74,703,709	138,783,034	140,009,198	346,201,589	349,152,481	624,993,821	629,170,877
Dl_2	794,989,317	51,221,832	1,872,044	4,300,220	6,172,264	57,394,096	63,158,771	114,380,603	200,480,716	202,352,760	473,955,734	478,255,954	876,789,210	882,961,474
Dl_3	601,484,603	38,846,925	1,223,920	2,694,908	3,918,828	42,765,753	41,142,248	79,989,173	149,698,141	150,922,061	367,878,461	370,573,369	668,498,663	672,417,491
D3_1	640,373,041	38,862,774	1,449,369	3,524,905	4,974,274	43,837,048	44,855,608	83,718,382	155,881,890	157,331,259	395,798,495	399,323,400	709,011,644	713,985,918
D3_2	734,842,848	45,495,979	1,781,328	4,453,384	6,234,712	51,730,691	52,298,130	97,794,109	180,014,308	181,795,636	450,799,719	455,253,103	812,609,663	818,844,375
D3_3	648,080,110	39,056,626	1,571,599	3,943,381	5,514,980	44,571,606	42,946,654	82,003,280	155,793,028	157,364,627	404,768,822	408,712,203	717,926,477	723,441,457
D7_1	724,092,220	44,860,645	1,628,173	3,412,579	5,040,752	49,901,397	53,097,892	97,958,537	182,199,685	183,827,858	438,893,246	442,305,825	804,920,789	809,961,541
D7_2	801,026,750	50,036,177	1,922,069	4,415,089	6,337,158	56,373,335	58,618,021	108,654,198	201,139,911	203,061,980	484,895,483	489,310,572	889,097,374	895,434,532
D7_3	887,027,971	55,145,861	1,759,801	3,811,845	5,571,646	60,717,507	65,068,186	120,214,047	223,856,907	225,616,708	537,385,371	541,197,216	986,858,986	992,430,632
D14_1	773,197,615	48,273,723	1,699,005	3,692,856	5,391,861	53,665,584	56,125,486	104,399,209	194,099,024	195,798,029	469,307,521	473,000,377	859,204,574	864,596,435
D14_2	751,529,174	45,467,695	1,428,734	3,140,148	4,568,882	50,036,577	54,811,715	100,279,410	187,318,211	188,746,945	459,362,671	462,502,819	835,427,827	839,996,709
D14_3	747,812,397	46,854,334	1,351,166	2,781,215	4,132,381	50,986,715	53,083,298	99,937,632	187,142,974	188,494,140	456,599,410	459,380,625	832,236,524	836,368,905
D28_1	865,031,656	53,965,853	2,050,638	4,973,766	7,024,404	60,990,257	62,481,622	116,447,475	216,014,310	218,064,948	525,545,467	530,519,233	959,624,725	966,649,129
D28_2	488,369,842	34,534,302	1,086,728	2,383,188	3,469,916	38,004,218	38,804,015	73,338,317	129,367,352	130,454,080	282,194,257	284,577,445	542,015,689	545,485,605
D28_3	711,340,972	44,133,614	1,631,822	3,757,447	5,389,269	49,522,883	53,942,098	98,075,712	178,506,315	180,138,137	429,369,676	433,127,123	788,014,128	793,403,397
D42_1	671,358,301	43,970,734	1,675,276	3,756,497	5,431,773	49,402,507	52,439,086	96,409,820	171,676,005	173,351,281	397,840,703	401,597,200	742,867,989	748,299,762
D42_2	730,293,196	47,608,062	1,786,388	3,945,949	5,732,337	53,340,399	54,943,465	102,551,527	185,879,442	187,665,830	436,129,890	440,075,839	809,675,162	815,407,499
D42_3	808,504,576	51,206,979	1,872,886	4,157,761	6,030,647	57,237,626	60,272,331	111,479,310	203,208,145	205,081,031	487,786,474	491,944,235	896,075,650	902,106,297
Max	887,027,971	55,145,861	2,315,844	5,327,073	7,642,917	62,637,186	65,068,186	120,214,047	223,856,907	225,616,708	537,385,371	541,197,216	986,858,986	992,430,632
Sham	2,197,536,283	143,938,078	5,825,960	13,341,026	19,166,986	163,105,064	168,364,135		556,961,385		1,309,105,699		1,866,067,084	1,885,234,070
DO	2,377,991,037	153,554,490	5,870,660	13,712,961	19,583,621	173,138,111	171,779,115		592,419,495		1,440,654,316		2,033,073,811	2,052,657,432
D1	1,960,339,308	125,095,027	4,322,128	9,946,020	14,268,148	139,363,175	143,978,458		488,961,891		1,188,035,784		1,676,997,675	1,691,265,823
D3	1,976,700,492	123,205,678	4,454,617	10,673,197	15,127,814	138,333,492	138,295,986		485,594,339		1,214,476,675		1,700,071,014	1,715,198,828
D7	2,412,146,941	150,042,683	5,310,043	11,639,513	16,949,556	166,992,239	176,784,099		607,196,503		1,461,174,100		2,068,370,603	2,085,320,159
D14	2,272,539,186	140,595,752	4,478,905	9,614,219	14,093,124	154,688,876	164,020,499		568,560,209		1,385,269,602		1,953,829,811	1,967,922,935
D28	2,064,742,470	132,633,769	4,769,188	11,114,401	15,883,589	148,517,358	155,227,735		523,887,977		1,237,109,400		1,760,997,377	1,776,880,966
D42	2,210,156,073	142,785,775	5,334,550	11,860,207	17,194,757	159,980,532	167,654,882		560,763,592		1,321,757,067		1,882,520,659	1,899,715,416