TABLE 2.
Calculated net flux through phosphoglycerate mutasea
| Item | Data set 1 (DFY724 [wild type])
|
Data set 2 (DFY725 [gcr2])
|
||
|---|---|---|---|---|
| −2 min | 10 min | −2 min | 10 min | |
| Vf | 11.6 (11.1) | 11.6 (9.72) | 2.52 (3.02) | 2.52 (4.75) |
| Vr | 19.4 (20.2) | 19.4 (25.6) | 4.21 (3.51) | 4.21 (1.85) |
| Glycerate-3-phosphate (mM) | 0.94 (0.90) | 0.97 (0.74) | 0.92 (1.10) | 4.31 (8.79) |
| Glycerate-2-phosphate (mM) | 0.18 (0.19) | 0.15 (0.20) | 0.22 (0.18) | 1.36 (0.66) |
| Ks (mM) | 0.24 (0.25) | 0.24 (0.31) | 0.24 (0.20) | 0.24 (0.11) |
| Kp (mM) | 0.08 (0.076) | 0.08 (0.06) | 0.08 (0.095) | 0.08 (0.16) |
| vf | 6.34 | 7.36 | 1.27 | 1.25 |
| vr | 6.09 | 5.26 | 1.52 | 1.99 |
| Net v (calculated) | 0.25 | 2.10 | −0.25 | −0.73 |
| Net v (measured)b | 0.0 | 0.42 | 0.0 | 0.38 |
The rate equations vf = (VfS/Ks)/D and vr = (VrP/Kp)/D, with D = 1 + S/Ks + P/Kp (where Vf and Vr are the Vmax values for the forward and reverse reactions, respectively, and Ks and Kp are the Kms for glycerate-3-phosphate and glycerate-2-phosphate, respectively), were applied, by using Microsoft EXCEL, to data from data sets 1 and 2 (Table 1), employing the Kms from reference 12 and its Vr/Vf value of 1.66. The values in parentheses are recalculations using the ethanol flux (last line) as one of the six input values and allowing just one of the other six inputs to vary: i.e., for set 1, 10 min, a net v of 0.42 would have been obtained with a Vf of 9.72 instead of 11.6 μmol/min × mg of protein, or a Vr of 25.6 instead of 19.4 μmol/min × mg of protein, etc. V and v units are micromoles per minute per milligram of protein.
Ethanol flux = vglucose × (ethanol/glucose).