Table 2.
RNA modification databases
| Database | Resources | Website | References |
|---|---|---|---|
| m6A2Target | m6A modifies the associated writers/erasers/readers | http://m6a2target.canceromics.org/#/ | Bao et al.220 |
| m6A-Atlas | m6A sites and quantitative epitranscriptome profiles | http://180.208.58.66/m6A-Atlas/index.html | Tang et al.221 |
| REPIC | m6A-seq and MeRIP-seq data | https://repicmod.uchicago.edu/repic | Liu et al.222 |
| DirectRMDB | Oxford Nanopore Technologies (ONT)-based database of quantitative RNA modification profiles | http://www.rnamd.org/directRMDB/ | Zhang et al.223 |
| MODOMICS | Modified residues, enzymes, guide RNAs, RNA modification pathways, sequences of modified RNAs, diseases | https://iimcb.genesilico.pl/modomics/ | Boccaletto et al.202 |
| RMVar | Multiple modification types, lncRNA/circRNA/miRNA methylation-associated SNPs/SNVs, RNA bing proteins (RBPs), diseases | http://rmvar.renlab.org/ | Luo et al.224 |
| RMDisease V2.0 | 1,366,252 RM-associated variants that may affect 16 different types of RNA modifications, diseases | www.rnamd.org/rmdisease2 | Song et al.225 |
| RMBase | Multiple methylation types, SNP/SNVs, RBPs, miRNA modifications | http://rna.sysu.edu.cn/rmbase/ | Xuan et al.226 |
| m5C-Atlas | m5C sites, associated SNPs, relevance to RNA secondary structure, RBPs | https://www.xjtlu.edu.cn/biologicalsciences/m5c-atlas | Ma et al.227 |