Table 3.

RNA modification site prediction methods

Tool	Modification	Algorithm	Website	References
WHISTLE	m6A	SVM	www.xjtlu.edu.cn/biologicalsciences/whistle; http://whistle-epitranscriptome.com	Chen et al.29
SRAMP	m6A	RF	http://www.cuilab.cn/sramp/	Zhou et al.30
BERMP	m6A	BGRU	http://www.bioinfogo.org/bermp	Huang et al.31
iRNA-PseColl	m6A	SVM	http://lin-group.cn/server/iRNA-PseColl/	Feng et al.32
Gene2vec	m6A	CNN	http://server.malab.cn/Gene2vec/	Zou et al.33
iRNA-3typeA	m1A m6A	SVM	http://lin-group.cn/server/iRNA-3typeA/	Chen et al.228
RAMPred	m1A	SVM	http://lin-group.cn/server/RAMPred	Chen et al.134
M1ARegpred	m1A	SVM	https://github.com/SXWuFJMU/m1ARegpred.	Yao et al.133
iRNA-m5C	m5C	RF	http://lin-group.cn/server/iRNA-m5C/service.html	Lv et al.229
RNAm5Cfinder	m5C	RF	http://www.rnanut.net/rnam5cfinder	Li et al.230
M5C-HPCR	m5C	HPCR	http://cslab.just.edu.cn:8080/M5C-HPCR/	Zhang et al.231
m6AmPred	m6Am	XgbDart	https://www.xjtlu.edu.cn/biologicalsciences/m6am	Jiang et al.232
MultiRM	Multiple types	OHEM	www.xjtlu.edu.cn/biologicalsciences/multirm	Song et al.233