Table 1.

Precision, recall and F1 values calculated from running xenoGI on the output of genome evolution simulations

	Precision	Recall	F1
Family gene content	0.48 ± 0.02	0.99 ± 0.01	0.64 ± 0.02
Origin	0.47 ± 0.02	0.97 ± 0.01	0.63 ± 0.02
Duplication	0.63 ± 0.03	0.9 ± 0.02	0.74 ± 0.03
Horizontal transfer within tree	0.6 ± 0.02	0.31 ± 0.03	0.4 ± 0.02
Loss	0.79 ± 0.02	0.62 ± 0.02	0.69 ± 0.01
Rearrangement	0.1 ± 0.02	0.33 ± 0.06	0.15 ± 0.03