Table 1.
Association of haplotypes of the SNPs of interest with spontaneous preterm birth.
SNPs in haploblock | Haplotypes (>1%)a | Frequency in preterm delivering women | Frequency in term delivering women | p | Adjusted pb |
---|---|---|---|---|---|
rs13011430 | rs8179838 | CT | 0.67 | 0.74 | 2.66e-5 | 7.98e-5 |
TC | 0.29 | 0.22 | 2.62e-5 | 7.86e-5 | |
CC | 0.03 | 0.03 | 0.91 | ns | |
rs10775437 | rs4798497 |rs2889405 | rs4798499 | GACC | 0.4 | 0.39 | 0.89 | ns |
GAAT | 0.31 | 0.26 | 0.0015 | 0.0075 | |
AAAC | 0.23 | 0.27 | 0.008 | 0.04 | |
GGCC | 0.04 | 0.06 | 0.09 | ns | |
GAAC | 0.02 | 0.01 | 0.68 | ns | |
rs11727167 | rs114981738 | AT | 0.49 | 0.51 | 0.21 | ns |
GT | 0.35 | 0.33 | 0.35 | ns | |
AC | 0.16 | 0.16 | 0.62 | ns | |
rs2689089 | rs182107462 | AA | 0.73 | 0.76 | 0.14 | ns |
CA | 0.19 | 0.18 | 0.35 | ns | |
CC | 0.08 | 0.07 | 0.28 | ns | |
rs12669058 | rs1799041 | rs740209 | AGG | 0.29 | 0.30 | 0.34 | ns |
CGT | 0.28 | 0.28 | 0.82 | ns | |
AGT | 0.24 | 0.25 | 0.53 | ns | |
AAT | 0.19 | 0.16 | 0.06 | ns | |
rs16237 | rs16238 | rs16968617 | TCG | 0.33 | 0.36 | 0.15 | ns |
GAG | 0.36 | 0.32 | 0.06 | ns | |
GCA | 0.23 | 0.22 | 0.57 | ns | |
GCG | 0.08 | 0.09 | 0.10 | ns | |
rs7629800 | rs11129012 | TC | 0.42 | 0.36 | 0.003 | 0.009 |
CC | 0.31 | 0.34 | 0.09 | ns | |
CT | 0.27 | 0.29 | 0.15 | ns | |
rs75603134 | rs13180906 | rs10078386 | rs77414036 | ACTT | 0.48 | 0.41 | 8.44e-5 | 3.38e-4 |
ATTT | 0.30 | 0.35 | 0.0074 | 0.03 | |
ATGT | 0.14 | 0.15 | 0.74 | ns | |
GTTC | 0.07 | 0.09 | 0.07 | ns | |
rs2327290 | rs6039882 | rs6131083 | rs6074125 | CTTG | 0.34 | 0.37 | 0.04 | ns |
CCTA | 0.22 | 0.26 | 0.0099 | 0.04 | |
ACTG | 0.26 | 0.22 | 0.0094 | 0.04 | |
ACGG | 0.18 | 0.14 | 0.0069 | 0.03 |
“SNPs of interest” are marked in bold.
ns means not significant.
Haplotypes with more than 1% frequency among the study participants were considered.
Bonferroni-adjusted p-values have been enlisted. P-values have been adjusted for the number of tests within each block.