TABLE 1.
Optimization of PCR primers.
Observed | Expected | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Johnson ID | clbN (733 bp) |
cdtB (466 bp) |
clbB (579 bp) |
cnf1 (974 bp) |
uidA (503 bp) |
clbN (733 bp) |
cdtB (466 bp) |
clbB (579 bp) |
cnf1 (974 bp) |
uidA (503 bp) |
1 | + | + | + | + | + | + | + | + | ||
2 | + | + | + | + | + | + | + | + | ||
3 | + | + | + | + | + | + | + | + | ||
4 | + | + | + | + | + | + | + | + | ||
5 | + | + | ||||||||
6 | + | + | ||||||||
7 | + | + | ||||||||
8 | + | + | + | + | + | + | ||||
9 | + | + |
Note: Escherichia coli strains with listed genotypes, and results, were used to construct the multiplex assay. Strains were courtesy of Dr. James Johnson at the University of Minnesota.
Abbreviation: PCR, polymerase chain reaction.